C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gap junction protein, gamma 1, 45kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587113 GJC1-009 ENSG00000182963 9606 - 17:44798448-44805409 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000587113
Transcript ID Adrenal Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000587113 1.857±0.00 1.872±0.00 3.985±0.00 1.794±0.00 0.241±0.12 1.910±0.00 0.677±0.15 2.303±0.46 2.220±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0001 VISTA 17:44247434-44848646
CIL_0003CR CIL_0003CR_0001 CGP 17:44759031-44830816
CIL_0006U4 CIL_0006U4_0001 CGP 17:44798448-44850480

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092567 Gjc1-004 protein_coding Mus_musculus 0 1186
ENSMUST00000107075 Gjc1-002 protein_coding Mus_musculus 0 1186
ENSMUST00000068933 Gjc1-001 protein_coding Mus_musculus 0 1186
ENSMUST00000155089 Gjc1-003 retained_intron Mus_musculus 0.00000003 66
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00002 57

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