C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 21988
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176268 Gm21988-002 ENSMUSG00000040904 10090 - 11:70235250-70239803 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0003 CGP 11:70235206-70239830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004521 IEA:ISS endoribonuclease activity
GO:0005575 ND cellular_component
GO:0009303 IEA:ISS rRNA transcription
GO:0016021 IEA integral component of membrane
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000402093 RNASEK-201 protein_coding Homo_sapiens 0 484
ENST00000439424 C17orf49-001 protein_coding Homo_sapiens 0 939
ENST00000546395 RNASEK-003 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000546495 C17orf49-006 protein_coding Homo_sapiens 0 981
ENST00000546760 C17orf49-003 protein_coding Homo_sapiens 0 641
ENST00000547302 RNASEK-C17orf49-004 protein_coding Homo_sapiens 0 848
ENST00000547709 C17orf49-009 processed_transcript Homo_sapiens 0 213
ENST00000547747 C17orf49-007 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000547863 RNASEK-C17orf49-002 retained_intron Homo_sapiens 0 992
ENST00000548577 RNASEK-001 protein_coding Homo_sapiens 0 484
ENST00000549393 RNASEK-004 protein_coding Homo_sapiens 0 351
ENST00000549775 RNASEK-C17orf49-001 retained_intron Homo_sapiens 0 837
ENST00000549857 C17orf49-002 retained_intron Homo_sapiens 0 326
ENST00000550038 C17orf49-008 processed_transcript Homo_sapiens 0 315
ENST00000552039 RNASEK-007 protein_coding Homo_sapiens 0 459
ENST00000552176 RNASEK-011 retained_intron Homo_sapiens 0 353
ENST00000552321 RNASEK-005 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000552402 C17orf49-004 protein_coding Homo_sapiens 0 536
ENST00000552775 C17orf49-005 protein_coding Homo_sapiens 0 863
ENST00000552842 RNASEK-006 protein_coding Homo_sapiens 0 411
ENST00000570898 RNASEK-008 protein_coding Homo_sapiens 0 374
ENST00000575822 RNASEK-009 retained_intron Homo_sapiens 4e-30 135
ENST00000593646 RNASEK-012 protein_coding Homo_sapiens 0 484
ENST00000607564 RNASEK-C17orf49-005 retained_intron Homo_sapiens 0 353

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