C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho/Rac guanine nucleotide exchange factor (GEF) 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000594665 ARHGEF18-003 ENSG00000104880 9606 + 19:7447063-7472477 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000594665
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000594665 10.847±0.00 3.604±0.00 3.347±0.00 2.497±0.00 0.754±0.00 5.909±0.00 0.968±0.00 3.000±0.00 0.516±0.00 5.761±0.77 2.866±0.02 4.667±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YI CIL_0004YI_0001 CGP 19:7348943-7472477
CIL_0002U4 CIL_0002U4_0001 CGP 19:7395113-7497449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004684 Arhgef18-001 protein_coding Mus_musculus 0 1530
ENSMUST00000156085 Arhgef18-003 retained_intron Mus_musculus 0 1397
ENSMUST00000131773 Arhgef18-002 retained_intron Mus_musculus 0 1003
ENSMUST00000145360 Arhgef18-006 retained_intron Mus_musculus 0 368

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