C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 2D (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000605551 SRGAP2D-001 ENSG00000270872 9606 + 1:143975087-144068350 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungOvaryPlacentaENST00000605551
Transcript ID Brain Colon Heart Liver Lung Ovary Placenta
ENST00000605551 0.262±0.00 0.106±0.00 0.092±0.00 0.175±0.00 0.395±0.00 0.037±0.00 0.049±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186543 Srgap2-004 protein_coding Mus_musculus 0 1254
ENSMUST00000097588 Srgap2-001 protein_coding Mus_musculus 0 1254
ENSMUST00000185596 Srgap2-005 protein_coding Mus_musculus 0 1247
ENSDART00000045391 srgap2a-201 protein_coding Danio_rerio 0 643
ENSDART00000103865 srgap2a-001 protein_coding Danio_rerio 0 643
ENSMUST00000060215 Srgap3-003 retained_intron Mus_musculus 0 361
ENSMUST00000113169 Srgap3-004 protein_coding Mus_musculus 0 361
ENSMUST00000088373 Srgap3-001 protein_coding Mus_musculus 0 361
ENSMUST00000188770 Srgap2-006 protein_coding Mus_musculus 0 261
ENSMUST00000189893 Srgap2-002 retained_intron Mus_musculus 5e-26 122

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