C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186543 Srgap2-004 ENSMUSG00000026425 10090 - 1:131295218-131527347 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000186543
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000186543 3.170±0.00 2.212±0.00 3.478±0.00 9.550±0.00 3.026±1.24 1.304±0.62 1.224±0.00 1.859±0.34 1.482±0.98 3.489±0.00 1.183±0.15 2.667±0.89 7.825±5.62 2.640±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VZ CIL_0005VZ_0002 CGP 1:131254343-131527352
CIL_00012Y CIL_00012Y_0003 CGP 1:131285251-131539872

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000045391 srgap2a-201 protein_coding Danio_rerio 0 1253
ENSDART00000103865 srgap2a-001 protein_coding Danio_rerio 0 1253
ENST00000304465 SRGAP2C-201 protein_coding Homo_sapiens 0 1254
ENST00000360413 SRGAP3-002 protein_coding Homo_sapiens 0 490
ENST00000367123 SRGAP2C-001 protein_coding Homo_sapiens 0 2265
ENST00000383836 SRGAP3-001 protein_coding Homo_sapiens 0 307
ENST00000412759 SRGAP2C-003 processed_transcript Homo_sapiens 0 294
ENST00000419187 SRGAP2-201 protein_coding Homo_sapiens 0 1266
ENST00000433332 SRGAP3-010 processed_transcript Homo_sapiens 0 274
ENST00000463366 SRGAP2B-004 processed_transcript Homo_sapiens 0 279
ENST00000467933 SRGAP2B-002 processed_transcript Homo_sapiens 0 294
ENST00000470951 SRGAP3-005 retained_intron Homo_sapiens 0.000000000000001 90
ENST00000480750 SRGAP3-009 processed_transcript Homo_sapiens 3e-16 90
ENST00000485983 SRGAP3-004 retained_intron Homo_sapiens 0 307
ENST00000494534 SRGAP2B-003 processed_transcript Homo_sapiens 0 276
ENST00000572793 SRGAP2-011 protein_coding Homo_sapiens 0 327
ENST00000573034 SRGAP2-001 protein_coding Homo_sapiens 0 3615
ENST00000579225 SRGAP2-007 protein_coding Homo_sapiens 0 752
ENST00000603575 SRGAP2-009 processed_transcript Homo_sapiens 0 276
ENST00000603708 SRGAP2-008 processed_transcript Homo_sapiens 0 276
ENST00000604010 SRGAP2-015 protein_coding Homo_sapiens 0 497
ENST00000604133 SRGAP2-012 processed_transcript Homo_sapiens 0 667
ENST00000604247 SRGAP2-005 retained_intron Homo_sapiens 0 337
ENST00000604419 SRGAP2-013 retained_intron Homo_sapiens 0 545
ENST00000604423 SRGAP2-006 retained_intron Homo_sapiens 0 405
ENST00000604925 SRGAP2-014 protein_coding Homo_sapiens 0 974
ENST00000605242 SRGAP2-010 processed_transcript Homo_sapiens 0 582
ENST00000605476 SRGAP2-004 protein_coding Homo_sapiens 0 1888
ENST00000605551 SRGAP2D-001 unprocessed_pseudogene Homo_sapiens 0 1254
ENST00000605610 SRGAP2-002 protein_coding Homo_sapiens 0 3446
ENST00000612199 SRGAP2B-001 protein_coding Homo_sapiens 0 2261
ENST00000613462 SRGAP2C-004 processed_transcript Homo_sapiens 0 276
ENST00000617209 SRGAP2C-002 processed_transcript Homo_sapiens 0 279
ENST00000618999 SRGAP3-201 protein_coding Homo_sapiens 0 274
ENST00000619678 SRGAP2B-201 protein_coding Homo_sapiens 0 1260
ENST00000621582 SRGAP2B-005 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000624686 SRGAP2-003 TEC Homo_sapiens 0 514
ENST00000624873 SRGAP2-016 protein_coding Homo_sapiens 0 3600

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