C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, T
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612229 PTPRT-201 ENSG00000196090 9606 - 20:42072774-42472569 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000612229
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000612229 0.005±0.00 0.070±0.00 6.667±3.85 0.203±0.06 0.039±0.00 0.011±0.00 0.103±0.04 0.097±0.01 0.441±0.12 0.009±0.01 0.140±0.19 0.217±0.00 0.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E5 CIL_0004E5_0001 CGP 20:41402101-43189970
CIL_0004E4 CIL_0004E4_0001 CGP 20:42072752-43464247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0006470 IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109443 Ptprt-003 protein_coding Mus_musculus 0 4421
ENSMUST00000109442 Ptprt-002 protein_coding Mus_musculus 0 2898
ENSMUST00000109445 Ptprt-001 protein_coding Mus_musculus 0 2898
ENSMUST00000109441 Ptprt-004 protein_coding Mus_musculus 0 2050
ENSMUST00000153770 Ptprt-006 processed_transcript Mus_musculus 0 577
ENSMUST00000037974 Ptprm-201 protein_coding Mus_musculus 2.99878e-43 183

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