C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617179 SBF2-201 ENSG00000133812 9606 - 11:9778667-10042981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000617179
Transcript ID Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000617179 1.761±0.00 4.013±0.00 1.057±0.00 1.424±0.00 0.429±0.00 1.679±0.00 2.576±0.00 2.492±0.92 1.900±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0001 VISTA 11:9311967-9915183
CIL_0004J8 CIL_0004J8_0001 CGP 11:9664077-10294207
CIL_0004J7 CIL_0004J7_0001 CGP 11:9778667-10307397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164759 Sbf2-001 protein_coding Mus_musculus 0 6639
ENSMUST00000033058 Sbf2-201 protein_coding Mus_musculus 0 4680
ENSMUST00000166020 Sbf2-002 protein_coding Mus_musculus 0 4499
ENSMUST00000171378 Sbf2-004 retained_intron Mus_musculus 0 2567
ENSMUST00000165449 Sbf2-003 retained_intron Mus_musculus 0 2567
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 1882
ENSMUST00000171218 Sbf2-007 protein_coding Mus_musculus 0 1258
ENSMUST00000165992 Sbf2-009 retained_intron Mus_musculus 0 881
ENSMUST00000164525 Sbf2-012 protein_coding Mus_musculus 0 782
ENSMUST00000169740 Sbf2-005 retained_intron Mus_musculus 0 688
ENSMUST00000164599 Sbf2-013 protein_coding Mus_musculus 0 630
ENSMUST00000164559 Sbf2-011 protein_coding Mus_musculus 0 575
ENSMUST00000167652 Sbf2-008 nonsense_mediated_decay Mus_musculus 0 464
ENSMUST00000166885 Sbf2-010 protein_coding Mus_musculus 0 204

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