C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family G (WHITE), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000619701 ABCG4-001 ENSG00000172350 9606 + 11:119149012-119162653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverOvaryPlacentaTestisENST00000619701
Transcript ID Adrenal Brain Colon Heart Liver Ovary Placenta Testis
ENST00000619701 0.098±0.00 1.004±0.22 0.066±0.00 0.256±0.00 0.029±0.00 0.140±0.00 0.048±0.00 2.573±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005886 TAS plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity
GO:0017127 TAS cholesterol transporter activity
GO:0033344 TAS cholesterol efflux
GO:0042803 IDA protein homodimerization activity
GO:0046982 IPI protein heterodimerization activity
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161354 Abcg4-001 protein_coding Mus_musculus 0 3140
ENSMUST00000034648 Abcg4-003 protein_coding Mus_musculus 0 3114
ENSMUST00000160323 Abcg4-002 processed_transcript Mus_musculus 0 1949
ENSMUST00000159385 Abcg4-005 retained_intron Mus_musculus 0 1640
ENSMUST00000085979 Abcg4-004 retained_intron Mus_musculus 0 1020
ENSDART00000086610 abcg4a-201 protein_coding Danio_rerio 0 822
ENSDART00000141444 abcg4a-001 protein_coding Danio_rerio 0 822
ENSMUST00000162783 Abcg4-010 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000024829 Abcg1-001 protein_coding Mus_musculus 0 523
ENSMUST00000161408 Abcg4-006 protein_coding Mus_musculus 0 448
ENSMUST00000159997 Abcg4-009 retained_intron Mus_musculus 0 418
ENSMUST00000161206 Abcg4-008 retained_intron Mus_musculus 0 409
ENSMUST00000160384 Abcg4-007 protein_coding Mus_musculus 0 368
ENSDART00000092809 abcg1-001 protein_coding Danio_rerio 0 348

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