C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620514 HMGN3-201 ENSG00000118418 9606 - 6:79201249-79234738 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleENST00000620514
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle
ENST00000620514 1.253±0.00 3.984±0.00 7.397±0.00 7.425±0.00 3.157±0.00 41.065±0.00 9.815±0.00 3.332±0.00 6.137±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000621 CIL_000621_0002 CGP 6:78935867-79234738
CIL_000626 CIL_000626_0002 CGP 6:79201245-79537458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0031492 IEA nucleosomal DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0061178 IEA regulation of insulin secretion involved in cellular response to glucose stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187193 Hmgn3-006 protein_coding Mus_musculus 0 1044
ENSMUST00000189777 Hmgn3-007 processed_transcript Mus_musculus 0 608
ENSMUST00000162246 Hmgn3-001 protein_coding Mus_musculus 0 560
ENSMUST00000161796 Hmgn3-002 protein_coding Mus_musculus 0 560
ENSMUST00000185315 Hmgn3-003 protein_coding Mus_musculus 0 560
ENSMUST00000190580 Hmgn3-009 retained_intron Mus_musculus 0 534
ENSMUST00000190154 Hmgn3-004 nonsense_mediated_decay Mus_musculus 0 403
ENSMUST00000185359 Hmgn3-008 retained_intron Mus_musculus 0 289
ENSMUST00000191105 Hmgn3-005 retained_intron Mus_musculus 0 252

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