C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C and casein kinase substrate in neurons 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620693 PACSIN1-202 ENSG00000124507 9606 + 6:34466061-34535221 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000620693
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000620693 0.003±0.00 0.151±0.00 0.002±0.00 33.239±15.22 0.061±0.06 1.982±0.00 0.408±0.40 0.021±0.02 0.169±0.00 0.004±0.00 0.107±0.00 0.028±0.00 0.516±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LP CIL_0004LP_0002 CGP 6:34417454-34535231
CIL_0004LR CIL_0004LR_0002 CGP 6:34466061-34556333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005543 IDA phospholipid binding
GO:0005737 IDA cytoplasm
GO:0005886 ISS plasma membrane
GO:0007015 IEA actin filament organization
GO:0008092 IEA cytoskeletal protein binding
GO:0030054 IEA cell junction
GO:0030137 IEA COPI-coated vesicle
GO:0031410 IEA cytoplasmic vesicle
GO:0032587 ISS ruffle membrane
GO:0043679 ISS axon terminus
GO:0045202 ISS synapse
GO:0045806 IEA negative regulation of endocytosis
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048488 ISS synaptic vesicle endocytosis
GO:0048666 IEA neuron development
GO:0048812 ISS neuron projection morphogenesis
GO:0072657 ISS protein localization to membrane
GO:0090002 ISS establishment of protein localization to plasma membrane
GO:0097320 IDA membrane tubulation
GO:1900006 ISS positive regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114872 Pacsin1-004 protein_coding Mus_musculus 0 1814
ENSMUST00000045896 Pacsin1-001 protein_coding Mus_musculus 0 1783
ENSMUST00000097360 Pacsin1-002 protein_coding Mus_musculus 0 1742
ENSMUST00000114873 Pacsin1-003 protein_coding Mus_musculus 0 1742
ENSDART00000092415 pacsin2-201 protein_coding Danio_rerio 0 532
ENSDART00000148728 pacsin2-001 protein_coding Danio_rerio 0 532
ENSMUST00000056177 Pacsin2-201 protein_coding Mus_musculus 0 497
ENSMUST00000165095 Pacsin2-202 protein_coding Mus_musculus 0 497
ENSMUST00000171436 Pacsin2-203 protein_coding Mus_musculus 0 497
ENSDART00000150099 pacsin2-002 retained_intron Danio_rerio 2e-35 156
ENSDART00000149305 pacsin2-004 protein_coding Danio_rerio 2e-30 139

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