C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 3B (BRIGHT-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000622429 ARID3B-201 ENSG00000179361 9606 + 15:74541206-74598129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000622429
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000622429 1.302±0.00 0.219±0.00 0.566±0.00 0.728±0.00 0.285±0.00 0.460±0.02 0.313±0.00 1.746±0.00 0.276±0.19 0.856±0.00 2.916±0.70 5.428±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0001 VISTA 15:74278506-74880453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 NAS:IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098686 Arid3b-002 protein_coding Mus_musculus 0 1332
ENSMUST00000004780 Arid3b-201 protein_coding Mus_musculus 0 1275
ENSMUST00000171444 Arid3b-001 protein_coding Mus_musculus 0 1273
ENSMUST00000164035 Arid3b-003 nonsense_mediated_decay Mus_musculus 0 813
ENSMUST00000164010 Arid3b-006 protein_coding Mus_musculus 0 804
ENSMUST00000114165 Arid3b-005 nonsense_mediated_decay Mus_musculus 0 776
ENSMUST00000167670 Arid3b-004 retained_intron Mus_musculus 0 721
ENSMUST00000171949 Arid3b-009 protein_coding Mus_musculus 0 435
ENSDART00000103470 arid3b-201 protein_coding Danio_rerio 0 359
ENSMUST00000170477 Arid3b-007 protein_coding Mus_musculus 0 198

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