C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000622516 CUX1-003 ENSG00000257923 9606 + 7:101815939-102283957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverLungMuscleOvaryPlacentaTestisENST00000622516
Transcript ID Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000622516 3.022±0.00 2.729±0.00 3.027±0.10 1.898±0.00 2.469±0.00 21.187±0.00 13.073±0.00 4.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FZ CIL_0002FZ_0002 CGP 7:101815904-102321711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0030173 IEA integral component of Golgi membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176745 Cux1-006 protein_coding Mus_musculus 0 2466
ENSMUST00000176216 Cux1-004 protein_coding Mus_musculus 0 2409
ENSMUST00000177297 Cux1-009 nonsense_mediated_decay Mus_musculus 0 2266
ENSMUST00000004097 Cux1-001 protein_coding Mus_musculus 0 1725
ENSMUST00000175975 Cux1-008 protein_coding Mus_musculus 0 1605
ENSMUST00000176778 Cux1-005 protein_coding Mus_musculus 0 1482
ENSMUST00000176172 Cux1-011 protein_coding Mus_musculus 0 1454
ENSMUST00000175998 Cux1-013 protein_coding Mus_musculus 0 1349
ENSMUST00000175918 Cux1-003 nonsense_mediated_decay Mus_musculus 0 1347
ENSMUST00000176486 Cux1-012 protein_coding Mus_musculus 0 1105
ENSMUST00000176501 Cux1-007 retained_intron Mus_musculus 0 789
ENSMUST00000176423 Cux1-017 protein_coding Mus_musculus 0 521
ENSMUST00000177305 Cux1-002 retained_intron Mus_musculus 0 411
ENSDART00000129464 cux2b-201 protein_coding Danio_rerio 0.000000007 68
ENSDART00000134378 cux2b-002 protein_coding Danio_rerio 0.000000007 68

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