C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428119 RHBDD2-002 ENSG00000005486 9606 + 7:75882044-75888921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000428119
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000428119 17.384±0.00 29.607±0.00 49.491±0.00 18.653±0.00 8.283±0.00 3.198±0.00 7.658±6.80 19.154±0.00 25.120±0.00 13.932±0.00 28.287±4.27 19.205±1.15 28.081±5.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NQ CIL_0006NQ_0001 CGP 7:75811665-75888926
CIL_0006NP CIL_0006NP_0001 CGP 7:75842602-75986855

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136748 Rhbdd2-002 nonsense_mediated_decay Mus_musculus 0 652
ENSMUST00000043707 Rhbdd2-001 protein_coding Mus_musculus 0 652
ENSMUST00000084599 Rhbdd2-003 retained_intron Mus_musculus 0 479

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