C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | vimentin | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000469543  |
VIM-003 |
ENSG00000026025 |
9606 | + |
10:17230004-17237593  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00046B | CIL_00046B_0002 | CGP | 10:17142254-17237593 |
| CIL_0005AO | CIL_0005AO_0001 | CGP | 10:17228259-17454330 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005198 | IEA | structural molecule activity |
| GO:0005882 | IEA | intermediate filament |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000028062
|
Vim-001 | protein_coding | Mus_musculus | 0 | 961 |
|
ENSMUST00000148248
|
Vim-004 | retained_intron | Mus_musculus | 0 | 520 |
|
ENSMUST00000023786
|
Krt6b-201 | protein_coding | Mus_musculus | 0.0000000000008 | 81 |
|
ENSMUST00000023788
|
Krt6a-201 | protein_coding | Mus_musculus | 0.0000000000008 | 81 |
|
ENSMUST00000023797
|
Krt4-201 | protein_coding | Mus_musculus | 0.000000000003 | 79 |
|
ENSMUST00000042957
|
Krt75-001 | protein_coding | Mus_musculus | 0.0000000001 | 73 |
|
ENSMUST00000023712
|
Krt2-001 | protein_coding | Mus_musculus | 0.0000003 | 62 |
