C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XVII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065618 COL17A1 9606 - 10:104031286-104086002 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353479 COL17A1-001 104031286-104086002 protein_coding
  ENST00000369733 COL17A1-003 104031286-104086002 protein_coding
  ENST00000393211 COL17A1-007 104059317-104085778 protein_coding
  ENST00000433822 COL17A1-002 104031288-104032968 protein_coding
  ENST00000480127 COL17A1-006 104055176-104055975 processed_transcript
  ENST00000483876 COL17A1-004 104070461-104080654 retained_intron
  ENST00000488320 COL17A1-005 104059685-104064548 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000353479ENST00000369733ENST00000393211ENST00000433822
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000353479 0.187±0.00 0.309±0.00 N/A N/A 5.257±3.70 1.084±0.88 0.009±0.00 0.068±0.00 N/A 0.401±0.22 8.332±9.30 79.100±37.15 3.781±0.00
ENST00000369733 0.089±0.00 N/A 0.060±0.00 0.162±0.00 N/A 1.912±1.52 0.052±0.00 0.073±0.00 0.842±0.00 N/A 1.065±1.03 N/A N/A
ENST00000393211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A
ENST00000433822 N/A 0.501±0.00 N/A N/A N/A 0.876±0.00 N/A 0.469±0.00 0.057±0.00 N/A 14.917±10.79 125.098±0.00 11.924±9.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FI CIL_0006FI_0001 CGP 10:103967201-104086002
CIL_00095H CIL_00095H_0001 VISTA 10:104027242-104629417
CIL_0006FJ CIL_0006FJ_0001 CGP 10:104031286-104126385

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007160 TAS cell-matrix adhesion
GO:0008544 TAS epidermis development
GO:0022617 TAS extracellular matrix disassembly
GO:0030056 IDA hemidesmosome
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031581 IDA hemidesmosome assembly
GO:0034329 TAS cell junction assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069415 col17a1a collagen, type XVII, alpha 1a protein_coding Danio_rerio
ENSDARG00000079011 col17a1b collagen, type XVII, alpha 1b protein_coding Danio_rerio
ENSMUSG00000025064 Col17a1 collagen, type XVII, alpha 1 protein_coding Mus_musculus

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