C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sidekick cell adhesion molecule 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392650 SDK2-002 ENSG00000069188 9606 - 17:73334384-73644089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverTestisENST00000392650
Transcript ID Adrenal Bladder Brain Liver Testis
ENST00000392650 0.094±0.00 0.042±0.00 0.271±0.12 0.046±0.00 1.039±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0001 VISTA 17:72990906-73592358
CIL_0008QM CIL_0008QM_0001 VISTA 17:73240460-73843108
CIL_0003AC CIL_0003AC_0002 CGP 17:73283624-73644089
CIL_00073F CIL_00073F_0001 CGP 17:73334384-74210655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041627 Sdk2-001 protein_coding Mus_musculus 0 7699
ENSDART00000140353 sdk2b-001 protein_coding Danio_rerio 0 2880
ENSMUST00000141943 Sdk2-003 protein_coding Mus_musculus 0 2760
ENSDART00000085121 sdk2b-201 protein_coding Danio_rerio 0 2416
ENSDART00000113318 SDK2 (2 of 2)-201 protein_coding Danio_rerio 0 2213
ENSDART00000153886 SDK2 (2 of 2)-001 protein_coding Danio_rerio 0 2196
ENSMUST00000155651 Sdk2-002 processed_transcript Mus_musculus 0 1714
ENSMUST00000125879 Sdk2-005 processed_transcript Mus_musculus 0 547

Loading