C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sidekick cell adhesion molecule 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424778 SDK2-004 ENSG00000069188 9606 - 17:73337939-73414655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartLungOvaryPlacentaTestisENST00000424778
Transcript ID Adipose Colon Heart Lung Ovary Placenta Testis
ENST00000424778 0.051±0.00 0.254±0.00 0.187±0.00 0.194±0.13 0.241±0.06 0.542±0.00 10.741±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0001 VISTA 17:72990906-73592358
CIL_0008QM CIL_0008QM_0001 VISTA 17:73240460-73843108
CIL_0003AC CIL_0003AC_0002 CGP 17:73283624-73644089
CIL_00073F CIL_00073F_0001 CGP 17:73334384-74210655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041627 Sdk2-001 protein_coding Mus_musculus 0 2750
ENSDART00000113318 SDK2 (2 of 2)-201 protein_coding Danio_rerio 0 907
ENSDART00000153886 SDK2 (2 of 2)-001 protein_coding Danio_rerio 0 907
ENSMUST00000125879 Sdk2-005 processed_transcript Mus_musculus 0 723

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