C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sidekick cell adhesion molecule 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479356 SDK2-001 ENSG00000069188 9606 - 17:73357370-73437769 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungPlacentaTestisENST00000479356
Transcript ID Heart Lung Placenta Testis
ENST00000479356 0.068±0.00 0.074±0.00 0.220±0.00 8.280±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0001 VISTA 17:72990906-73592358
CIL_0008QM CIL_0008QM_0001 VISTA 17:73240460-73843108
CIL_0003AC CIL_0003AC_0002 CGP 17:73283624-73644089
CIL_00073F CIL_00073F_0001 CGP 17:73334384-74210655

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041627 Sdk2-001 protein_coding Mus_musculus 0 5548
ENSDART00000140353 sdk2b-001 protein_coding Danio_rerio 0 2158
ENSDART00000085121 sdk2b-201 protein_coding Danio_rerio 0 2008
ENSDART00000113318 SDK2 (2 of 2)-201 protein_coding Danio_rerio 0 1860
ENSDART00000153886 SDK2 (2 of 2)-001 protein_coding Danio_rerio 0 1832
ENSMUST00000141943 Sdk2-003 protein_coding Mus_musculus 0 1772
ENSMUST00000155651 Sdk2-002 processed_transcript Mus_musculus 0 726
ENSMUST00000125879 Sdk2-005 processed_transcript Mus_musculus 0 547

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