C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 7-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000087152 ATXN7L3 9606 - 17:44191805-44200113 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389384 ATXN7L3-001 44191805-44198379 protein_coding
  ENST00000454077 ATXN7L3-003 44191805-44198070 protein_coding
  ENST00000586688 ATXN7L3-010 44194371-44195293 retained_intron
  ENST00000587022 ATXN7L3-005 44195121-44196213 retained_intron
  ENST00000587097 ATXN7L3-002 44194383-44199852 protein_coding
  ENST00000589607 ATXN7L3-007 44194651-44196163 retained_intron
  ENST00000589805 ATXN7L3-011 44196964-44199206 protein_coding
  ENST00000590169 ATXN7L3-004 44196941-44198511 protein_coding
  ENST00000590537 ATXN7L3-006 44194540-44196166 protein_coding
  ENST00000591295 ATXN7L3-009 44191805-44196053 protein_coding
  ENST00000591807 ATXN7L3-008 44194657-44195476 retained_intron
  ENST00000593073 ATXN7L3-012 44194240-44200113 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389384ENST00000454077ENST00000587097ENST00000589805ENST00000590169ENST00000591295ENST00000593073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389384 2.388±0.00 4.321±0.00 0.276±0.00 0.850±0.00 2.200±0.00 3.399±0.00 N/A N/A N/A 3.189±2.44 N/A 11.668±10.94 7.725±1.24 12.999±8.36
ENST00000454077 9.651±0.00 4.042±0.00 0.587±0.00 15.590±10.53 2.657±2.05 4.780±0.00 3.864±3.48 1.345±0.00 2.511±1.16 3.870±0.00 0.397±0.00 7.506±5.78 8.495±3.29 10.471±0.00
ENST00000587097 N/A N/A N/A 4.394±0.00 2.577±0.00 1.979±0.00 0.583±0.00 N/A 1.421±0.00 1.026±0.00 1.087±0.00 3.755±0.00 9.069±0.00 N/A
ENST00000589805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.870±0.00 N/A 25.086±0.00 95.224±0.00
ENST00000590169 N/A N/A 3.251±0.00 7.260±0.00 N/A 4.503±0.00 N/A 2.767±0.00 3.992±0.00 1.997±0.00 N/A 57.306±50.14 N/A 80.557±0.00
ENST00000591295 N/A 7.169±0.00 N/A N/A 2.141±0.00 3.180±0.00 N/A N/A 3.067±0.00 5.719±0.00 N/A 8.271±0.00 7.170±0.76 4.460±0.00
ENST00000593073 N/A N/A 1.812±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0003L7 CIL_0003L7_0002 CGP 17:44186970-44200113
CIL_0004D4 CIL_0004D4_0002 CGP 17:44191805-44221626

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000124 IDA SAGA complex
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016578 IDA histone deubiquitination
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071819 IEA DUBm complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029331 atxn7l3 ataxin 7-like 3 protein_coding Danio_rerio
ENSDARG00000079131 si:dkeyp-118b1.2 si:dkeyp-118b1.2 protein_coding Danio_rerio
ENSMUSG00000059995 Atxn7l3 ataxin 7-like 3 protein_coding Mus_musculus

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