C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 7-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454077 ATXN7L3-003 ENSG00000087152 9606 - 17:44191805-44198070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000454077
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000454077 9.651±0.00 4.042±0.00 0.587±0.00 15.590±10.53 2.657±2.05 4.780±0.00 3.864±3.48 1.345±0.00 2.511±1.16 3.870±0.00 0.397±0.00 7.506±5.78 8.495±3.29 10.471±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0003L7 CIL_0003L7_0002 CGP 17:44186970-44200113
CIL_0004D4 CIL_0004D4_0002 CGP 17:44191805-44221626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000124 IDA SAGA complex
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016578 IDA histone deubiquitination
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071819 IEA DUBm complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107132 Atxn7l3-201 protein_coding Mus_musculus 0 2935
ENSMUST00000137387 Atxn7l3-003 protein_coding Mus_musculus 0 2913
ENSMUST00000073234 Atxn7l3-001 protein_coding Mus_musculus 0 2806
ENSMUST00000107134 Atxn7l3-002 protein_coding Mus_musculus 0 2806
ENSMUST00000141516 Atxn7l3-005 protein_coding Mus_musculus 0 2087
ENSMUST00000145484 Atxn7l3-004 retained_intron Mus_musculus 0 2087
ENSDART00000104118 atxn7l3-201 protein_coding Danio_rerio 0 422
ENSMUST00000099276 Atxn7l3b-001 protein_coding Mus_musculus 0.000000000000006 88

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