C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 7-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059995 Atxn7l3 10090 - 11:102289300-102296631 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000073234 Atxn7l3-001 102289300-102296631 protein_coding
  ENSMUST00000107132 Atxn7l3-201 102289301-102296629 protein_coding
  ENSMUST00000107134 Atxn7l3-002 102289300-102295312 protein_coding
  ENSMUST00000137387 Atxn7l3-003 102289300-102294987 protein_coding
  ENSMUST00000141516 Atxn7l3-005 102289300-102294163 protein_coding
  ENSMUST00000145484 Atxn7l3-004 102289300-102293444 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073234ENSMUST00000107132ENSMUST00000107134ENSMUST00000137387ENSMUST00000141516ENSMUST00000145484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073234 4.196±0.80 N/A 6.063±0.13 26.316±14.43 2.345±0.21 6.646±1.25 3.053±1.27 2.663±0.91 3.489±1.99 2.824±0.17 3.202±1.19 6.706±4.75 12.118±8.43 2.864±1.02
ENSMUST00000107132 N/A N/A N/A N/A N/A 4.564±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107134 2.133±0.26 N/A 2.973±1.03 N/A N/A N/A N/A N/A 2.230±0.00 N/A N/A 8.699±2.68 1.560±0.00 N/A
ENSMUST00000137387 5.533±0.99 5.183±0.41 5.610±1.00 22.178±1.24 5.562±1.29 6.355±2.16 3.060±1.43 4.740±2.44 3.652±1.27 7.951±1.01 1.091±0.36 7.940±2.16 6.176±2.90 3.149±1.69
ENSMUST00000141516 N/A 12.419±4.15 2.498±0.00 11.704±0.02 N/A 6.631±4.20 1.172±0.29 2.401±0.00 2.433±0.54 N/A 1.533±0.46 3.735±0.00 1.630±0.00 N/A
ENSMUST00000145484 4.158±1.38 10.751±0.45 N/A N/A 10.295±5.42 6.144±2.03 1.806±0.00 2.166±0.24 N/A 6.026±2.20 1.327±0.00 11.841±4.11 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0003L7 CIL_0003L7_0003 CGP 11:102284931-102296631
CIL_0004D4 CIL_0004D4_0003 CGP 11:102289300-102319742

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000124 ISS SAGA complex
GO:0003713 ISS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016578 IEA histone deubiquitination
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0071819 IEA DUBm complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029331 atxn7l3 ataxin 7-like 3 protein_coding Danio_rerio
ENSDARG00000079131 si:dkeyp-118b1.2 si:dkeyp-118b1.2 protein_coding Danio_rerio
ENSG00000087152 ATXN7L3 ataxin 7-like 3 protein_coding Homo_sapiens

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