C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 7-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587097 ATXN7L3-002 ENSG00000087152 9606 - 17:44194383-44199852 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000587097
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000587097 4.394±0.00 2.577±0.00 1.979±0.00 0.583±0.00 1.421±0.00 1.026±0.00 1.087±0.00 3.755±0.00 9.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0003L7 CIL_0003L7_0002 CGP 17:44186970-44200113
CIL_0004D4 CIL_0004D4_0002 CGP 17:44191805-44221626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073234 Atxn7l3-001 protein_coding Mus_musculus 0 1864
ENSMUST00000107132 Atxn7l3-201 protein_coding Mus_musculus 0 1768
ENSMUST00000107134 Atxn7l3-002 protein_coding Mus_musculus 0 1482
ENSMUST00000137387 Atxn7l3-003 protein_coding Mus_musculus 0 1254
ENSMUST00000141516 Atxn7l3-005 protein_coding Mus_musculus 0 560
ENSMUST00000145484 Atxn7l3-004 retained_intron Mus_musculus 0 560
ENSDART00000104118 atxn7l3-201 protein_coding Danio_rerio 0 451

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