Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	ataxin 7-like 3
ENST00000389384	ATXN7L3-001	ENSG00000087152	9606	-	17:44191805-44198379	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Lung	Ovary	Placenta	Testis
ENST00000389384	2.388±0.00	4.321±0.00	0.276±0.00	0.850±0.00	2.200±0.00	3.399±0.00	3.189±2.44	11.668±10.94	7.725±1.24	12.999±8.36

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0009B6	CIL_0009B6_0001	VISTA	17:43966083-44567774
CIL_0003L7	CIL_0003L7_0002	CGP	17:44186970-44200113
CIL_0004D4	CIL_0004D4_0002	CGP	17:44191805-44221626

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000124	IDA	SAGA complex
GO:0003713	IDA	transcription coactivator activity
GO:0005515	IPI	protein binding
GO:0005634	IEA	nucleus
GO:0006325	TAS	chromatin organization
GO:0006351	IEA	transcription, DNA-templated
GO:0008270	IEA	zinc ion binding
GO:0016578	IDA	histone deubiquitination
GO:0030374	IDA	ligand-dependent nuclear receptor transcription coactivator activity
GO:0045893	IDA	positive regulation of transcription, DNA-templated
GO:0071819	IEA	DUBm complex

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000107134	Atxn7l3-002	protein_coding	Mus_musculus	0	3232
ENSMUST00000073234	Atxn7l3-001	protein_coding	Mus_musculus	0	3009
ENSMUST00000107132	Atxn7l3-201	protein_coding	Mus_musculus	0	2918
ENSMUST00000137387	Atxn7l3-003	protein_coding	Mus_musculus	0	2784
ENSMUST00000141516	Atxn7l3-005	protein_coding	Mus_musculus	0	2087
ENSMUST00000145484	Atxn7l3-004	retained_intron	Mus_musculus	0	2087
ENSDART00000104118	atxn7l3-201	protein_coding	Danio_rerio	0	451
ENSMUST00000099276	Atxn7l3b-001	protein_coding	Mus_musculus	0.000000000000007	88

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