C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle transport through interaction with t-SNAREs 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021124 Vti1b 10090 - 12:79156017-79172667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055262 Vti1b-001 79156017-79172667 protein_coding
  ENSMUST00000162569 Vti1b-004 79156329-79165139 protein_coding
  ENSMUST00000162789 Vti1b-002 79156170-79172448 nonsense_mediated_decay
  ENSMUST00000163031 Vti1b-003 79156517-79166368 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055262ENSMUST00000162569ENSMUST00000162789
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055262 12.072±1.17 N/A 40.383±1.72 30.231±8.88 6.993±1.27 12.244±3.01 11.106±0.82 11.135±2.99 7.071±4.21 11.694±2.34 16.598±3.04 9.264±7.32 27.608±3.35 11.130±3.25
ENSMUST00000162569 N/A N/A N/A 128.111±0.00 14.382±0.00 N/A 6.358±0.00 N/A N/A N/A 10.273±1.00 39.781±4.15 50.478±8.08 N/A
ENSMUST00000162789 8.995±2.47 48.714±19.42 10.244±0.00 8.196±0.50 13.962±6.80 31.485±6.24 9.885±3.31 19.104±3.14 11.331±6.99 15.985±2.90 12.218±1.74 12.239±7.09 7.823±1.75 4.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CL CIL_0002CL_0002 CGP 12:79080673-79156301
CIL_0001KL CIL_0001KL_0003 CGP 12:79130777-79172667
CIL_0001MK CIL_0001MK_0002 CGP 12:79156017-79192293

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000149 ISO SNARE binding
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0031902 IEA late endosome membrane
GO:0043025 IEA neuronal cell body
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039270 vti1b vesicle transport through interaction with t-SNAREs homolog 1B (yeast) protein_coding Danio_rerio
ENSG00000100568 VTI1B vesicle transport through interaction with t-SNAREs 1B protein_coding Homo_sapiens

Loading