C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP56 ribonucleoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101361 NOP56 9606 + 20:2652145-2658393 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329276 NOP56-009 2652145-2658393 protein_coding
  ENST00000415272 NOP56-010 2655616-2658359 protein_coding
  ENST00000445139 NOP56-016 2652649-2655512 protein_coding
  ENST00000460258 NOP56-015 2653001-2655512 processed_transcript
  ENST00000462630 NOP56-005 2656640-2658393 processed_transcript
  ENST00000466447 NOP56-006 2656111-2658393 processed_transcript
  ENST00000467196 NOP56-007 2655436-2658393 nonsense_mediated_decay
  ENST00000467857 NOP56-008 2656949-2658393 processed_transcript
  ENST00000469588 NOP56-002 2652646-2655512 processed_transcript
  ENST00000470143 NOP56-014 2652633-2653820 processed_transcript
  ENST00000471023 NOP56-018 2656410-2657225 processed_transcript
  ENST00000480447 NOP56-004 2656159-2657218 processed_transcript
  ENST00000480992 NOP56-003 2654789-2656549 processed_transcript
  ENST00000484998 NOP56-017 2655097-2656549 processed_transcript
  ENST00000490753 NOP56-001 2656401-2657449 processed_transcript
  ENST00000492135 NOP56-011 2655946-2658393 processed_transcript
  ENST00000494697 NOP56-012 2652632-2655512 processed_transcript
  ENST00000496775 NOP56-013 2654234-2655512 processed_transcript
  ENST00000612233 NOP56-019 2655413-2658392 retained_intron
  ENST00000616692 NOP56-020 2655547-2658393 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329276ENST00000415272ENST00000462630ENST00000466447ENST00000467196ENST00000467857ENST00000469588ENST00000480447ENST00000480992ENST00000490753ENST00000492135ENST00000496775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329276 18.929±0.00 34.755±0.00 2.445±0.00 20.981±9.95 14.103±5.89 14.941±8.76 4.265±2.96 22.500±0.00 9.792±4.05 6.588±3.72 28.545±0.00 25.531±22.34 20.523±11.88 37.590±0.00
ENST00000415272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.903±0.00 11.586±0.00 N/A N/A
ENST00000462630 N/A 46.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.037±0.00 N/A N/A
ENST00000466447 N/A N/A N/A N/A N/A N/A N/A 1.272±0.00 N/A N/A N/A N/A N/A N/A
ENST00000467196 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.915±0.00 N/A N/A N/A N/A
ENST00000467857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.551±0.00 N/A N/A N/A
ENST00000469588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.463±0.00 22.521±0.00
ENST00000480447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 88.939±0.00 23.156±0.00 30.190±0.00
ENST00000480992 N/A N/A N/A N/A N/A N/A 5.453±0.00 4.038±0.00 N/A N/A N/A N/A N/A N/A
ENST00000490753 N/A N/A N/A N/A N/A N/A N/A 8.053±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492135 N/A N/A N/A N/A 8.177±0.00 N/A N/A N/A N/A N/A N/A 15.065±0.00 N/A N/A
ENST00000496775 N/A N/A N/A N/A N/A 12.015±0.00 3.304±0.00 5.602±0.00 11.480±0.00 5.482±0.00 9.345±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FW CIL_0000FW_0001 CGP 20:2536607-2658393
CIL_0000FV CIL_0000FV_0001 CGP 20:2652145-2664219

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005732 IDA small nucleolar ribonucleoprotein complex
GO:0005737 IEA cytoplasm
GO:0006364 TAS rRNA processing
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0030515 IDA snoRNA binding
GO:0031428 NAS box C/D snoRNP complex
GO:0044822 IDA poly(A) RNA binding
GO:0070761 IDA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012820 nop56 NOP56 ribonucleoprotein homolog protein_coding Danio_rerio
ENSMUSG00000027405 Nop56 NOP56 ribonucleoprotein protein_coding Mus_musculus

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