C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP56 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329276 NOP56-009 ENSG00000101361 9606 + 20:2652145-2658393 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329276
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329276 18.929±0.00 34.755±0.00 2.445±0.00 20.981±9.95 14.103±5.89 14.941±8.76 4.265±2.96 22.500±0.00 9.792±4.05 6.588±3.72 28.545±0.00 25.531±22.34 20.523±11.88 37.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FW CIL_0000FW_0001 CGP 20:2536607-2658393
CIL_0000FV CIL_0000FV_0001 CGP 20:2652145-2664219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005732 IDA small nucleolar ribonucleoprotein complex
GO:0005737 IEA cytoplasm
GO:0006364 TAS rRNA processing
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0030515 IDA snoRNA binding
GO:0031428 NAS box C/D snoRNP complex
GO:0044822 IDA poly(A) RNA binding
GO:0070761 IDA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103198 Nop56-001 protein_coding Mus_musculus 0 1912
ENSMUST00000161543 Nop56-003 retained_intron Mus_musculus 0 915
ENSMUST00000136621 Nop56-006 protein_coding Mus_musculus 0 913
ENSMUST00000146454 Nop56-014 protein_coding Mus_musculus 0 911
ENSMUST00000162063 Nop56-011 retained_intron Mus_musculus 0 754
ENSMUST00000141872 Nop56-007 protein_coding Mus_musculus 0 617
ENSMUST00000184633 Gm27219-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000028890 Nop56-005 protein_coding Mus_musculus 0 580
ENSMUST00000153353 Nop56-004 retained_intron Mus_musculus 0 580
ENSMUST00000117810 Gm9432-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000149955 Nop56-010 nonsense_mediated_decay Mus_musculus 0 558
ENSMUST00000150401 Nop56-013 nonsense_mediated_decay Mus_musculus 0 540
ENSMUST00000133351 Nop56-016 retained_intron Mus_musculus 0 538
ENSMUST00000150745 Nop56-002 retained_intron Mus_musculus 0 486
ENSMUST00000159373 Nop56-018 protein_coding Mus_musculus 0 475
ENSMUST00000160976 Nop56-009 retained_intron Mus_musculus 0 424
ENSMUST00000161025 Nop56-019 retained_intron Mus_musculus 0 398
ENSMUST00000145335 Nop56-017 retained_intron Mus_musculus 0 348
ENSMUST00000143547 Nop56-012 nonsense_mediated_decay Mus_musculus 2e-37 161

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