C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP56 ribonucleoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027405 Nop56 10090 + 2:130274430-130279313 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028890 Nop56-005 130277157-130279278 protein_coding
  ENSMUST00000103198 Nop56-001 130274430-130279313 protein_coding
  ENSMUST00000133351 Nop56-016 130277222-130278463 retained_intron
  ENSMUST00000136621 Nop56-006 130274455-130277537 protein_coding
  ENSMUST00000138163 Nop56-008 130274831-130275696 retained_intron
  ENSMUST00000141872 Nop56-007 130274492-130276098 protein_coding
  ENSMUST00000143547 Nop56-012 130276597-130277959 nonsense_mediated_decay
  ENSMUST00000145335 Nop56-017 130277711-130279280 retained_intron
  ENSMUST00000146454 Nop56-014 130276717-130279253 protein_coding
  ENSMUST00000149955 Nop56-010 130276159-130278963 nonsense_mediated_decay
  ENSMUST00000150401 Nop56-013 130277218-130279279 nonsense_mediated_decay
  ENSMUST00000150745 Nop56-002 130274444-130279312 retained_intron
  ENSMUST00000153353 Nop56-004 130277089-130279307 retained_intron
  ENSMUST00000159373 Nop56-018 130277315-130278230 protein_coding
  ENSMUST00000160183 Nop56-015 130275796-130276266 retained_intron
  ENSMUST00000160976 Nop56-009 130276300-130277570 retained_intron
  ENSMUST00000161025 Nop56-019 130276665-130277282 retained_intron
  ENSMUST00000161543 Nop56-003 130274446-130278983 retained_intron
  ENSMUST00000162063 Nop56-011 130276475-130277955 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverOvaryPlacentaENSMUST00000103198ENSMUST00000136621ENSMUST00000145335ENSMUST00000161543
Transcript ID Adipose Bladder Brain Liver Ovary Placenta
ENSMUST00000103198 35.974±0.10 27.148±6.13 56.174±3.61 77.752±30.82 33.297±3.94 41.136±16.47
ENSMUST00000136621 N/A N/A 69.853±0.00 93.305±0.00 70.009±0.00 63.667±39.80
ENSMUST00000145335 N/A N/A N/A N/A 54.744±0.00 55.450±25.01
ENSMUST00000161543 N/A N/A 14.599±4.14 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FW CIL_0000FW_0002 CGP 2:130195194-130279313
CIL_0000FV CIL_0000FV_0002 CGP 2:130274430-130284547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005730 IEA nucleolus
GO:0005732 IEA small nucleolar ribonucleoprotein complex
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0030515 IEA snoRNA binding
GO:0042254 IEA ribosome biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070761 IEA pre-snoRNP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012820 nop56 NOP56 ribonucleoprotein homolog protein_coding Danio_rerio
ENSG00000101361 NOP56 NOP56 ribonucleoprotein protein_coding Homo_sapiens

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