C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | NOP56 ribonucleoprotein | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000612233  |
NOP56-019 |
ENSG00000101361 |
9606 | + |
20:2655413-2658392  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007SG | CIL_0007SG_0001 | VISTA | 20:2438562-3039143 |
| CIL_0000FW | CIL_0000FW_0001 | CGP | 20:2536607-2658393 |
| CIL_0000FV | CIL_0000FV_0001 | CGP | 20:2652145-2664219 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000150745
|
Nop56-002 | retained_intron | Mus_musculus | 0 | 800 |
|
ENSMUST00000161543
|
Nop56-003 | retained_intron | Mus_musculus | 0 | 784 |
|
ENSMUST00000143547
|
Nop56-012 | nonsense_mediated_decay | Mus_musculus | 0 | 392 |
|
ENSMUST00000162063
|
Nop56-011 | retained_intron | Mus_musculus | 0 | 366 |
|
ENSMUST00000153353
|
Nop56-004 | retained_intron | Mus_musculus | 0 | 359 |
|
ENSMUST00000161025
|
Nop56-019 | retained_intron | Mus_musculus | 0 | 350 |
|
ENSMUST00000103198
|
Nop56-001 | protein_coding | Mus_musculus | 0 | 243 |
|
ENSMUST00000146454
|
Nop56-014 | protein_coding | Mus_musculus | 0 | 239 |
|
ENSMUST00000160976
|
Nop56-009 | retained_intron | Mus_musculus | 0 | 239 |
|
ENSMUST00000149955
|
Nop56-010 | nonsense_mediated_decay | Mus_musculus | 0 | 239 |
|
ENSMUST00000133351
|
Nop56-016 | retained_intron | Mus_musculus | 0 | 213 |
|
ENSMUST00000028890
|
Nop56-005 | protein_coding | Mus_musculus | 0 | 209 |
|
ENSMUST00000150401
|
Nop56-013 | nonsense_mediated_decay | Mus_musculus | 5e-35 | 154 |
|
ENSMUST00000122451
|
Gm1947-001 | processed_pseudogene | Mus_musculus | 4e-31 | 141 |
