C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP56 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612233 NOP56-019 ENSG00000101361 9606 + 20:2655413-2658392 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FW CIL_0000FW_0001 CGP 20:2536607-2658393
CIL_0000FV CIL_0000FV_0001 CGP 20:2652145-2664219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150745 Nop56-002 retained_intron Mus_musculus 0 800
ENSMUST00000161543 Nop56-003 retained_intron Mus_musculus 0 784
ENSMUST00000143547 Nop56-012 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000162063 Nop56-011 retained_intron Mus_musculus 0 366
ENSMUST00000153353 Nop56-004 retained_intron Mus_musculus 0 359
ENSMUST00000161025 Nop56-019 retained_intron Mus_musculus 0 350
ENSMUST00000103198 Nop56-001 protein_coding Mus_musculus 0 243
ENSMUST00000146454 Nop56-014 protein_coding Mus_musculus 0 239
ENSMUST00000160976 Nop56-009 retained_intron Mus_musculus 0 239
ENSMUST00000149955 Nop56-010 nonsense_mediated_decay Mus_musculus 0 239
ENSMUST00000133351 Nop56-016 retained_intron Mus_musculus 0 213
ENSMUST00000028890 Nop56-005 protein_coding Mus_musculus 0 209
ENSMUST00000150401 Nop56-013 nonsense_mediated_decay Mus_musculus 5e-35 154
ENSMUST00000122451 Gm1947-001 processed_pseudogene Mus_musculus 4e-31 141

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