C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101811 CSTF2 9606 + X:100820359-100840932 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372972 CSTF2-001 100820401-100840918 protein_coding
  ENST00000413437 CSTF2-004 100820536-100824257 protein_coding
  ENST00000415585 CSTF2-201 100820359-100840932 protein_coding
  ENST00000475126 CSTF2-003 100820417-100840923 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372972ENST00000413437ENST00000415585ENST00000475126
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372972 N/A 1.208±0.00 0.385±0.00 0.344±0.01 1.314±1.10 1.196±0.24 1.585±0.00 3.531±0.00 2.022±0.00 1.553±0.31 0.330±0.00 7.333±3.36 3.747±0.10 6.503±0.68
ENST00000413437 N/A N/A N/A 1.607±0.00 1.724±0.00 N/A N/A N/A N/A 2.052±0.00 N/A 4.525±0.00 2.897±0.00 5.375±0.00
ENST00000415585 0.447±0.00 N/A N/A 1.154±0.21 N/A 1.043±0.00 0.135±0.00 N/A N/A N/A N/A 0.689±0.00 1.253±0.00 N/A
ENST00000475126 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 0.724±0.46 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BC CIL_0007BC_0001 CGP X:100674491-100840932
CIL_0000YO CIL_0000YO_0002 CGP X:100820359-100874345

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 TAS mRNA polyadenylation
GO:0006379 TAS mRNA cleavage
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0071920 IDA cleavage body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044009 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2 protein_coding Danio_rerio
ENSDARG00000090788 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2 protein_coding Danio_rerio
ENSMUSG00000031256 Cstf2 cleavage stimulation factor, 3' pre-RNA subunit 2 protein_coding Mus_musculus

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