C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007BC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102362-ENSG00000101811 CGP 9606 X:100674491-100840932
GeneTranscriptPositionBiotype
ENSG00000101811 (CSTF2)
cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa 		ENST00000372972 (CSTF2-001) 100820401-100840918 protein_coding
ENST00000413437 (CSTF2-004) 100820536-100824257 protein_coding
ENST00000415585 (CSTF2-201) 100820359-100840932 protein_coding
ENST00000475126 (CSTF2-003) 100820417-100840923 nonsense_mediated_decay
ENSG00000102362 (SYTL4)
synaptotagmin-like 4 		ENST00000263033 (SYTL4-002) 100675897-100732121 protein_coding
ENST00000276141 (SYTL4-201) 100674494-100731534 protein_coding
ENST00000372981 (SYTL4-003) 100684696-100732120 protein_coding
ENST00000372989 (SYTL4-001) 100674491-100731510 protein_coding
ENST00000491326 (SYTL4-005) 100731414-100732123 processed_transcript
ENST00000491602 (SYTL4-004) 100674494-100678783 processed_transcript
ENSG00000202231 (SNORA9)
Small nucleolar RNA SNORA9 		ENST00000365361 (SNORA9.1-202) 100822620-100822752 snoRNA
ENSG00000223819 (RP3-347M6.1)
 ENST00000446082 (RP3-347M6.1-001) 100800303-100800784 processed_pseudogene
ENSG00000238116 (RP3-347M6.2)
 ENST00000414579 (RP3-347M6.2-001) 100801188-100803060 processed_pseudogene
ENSG00000275320 (RP3-347M6.3)
 ENST00000610385 (RP3-347M6.3-001) 100815865-100817174 processed_pseudogene
CIL_0007BC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031255-ENSMUSG00000031256 CGP 10090 X:133936385-134086819
GeneTranscriptPositionBiotype
ENSMUSG00000031255 (Sytl4)
synaptotagmin-like 4 		ENSMUST00000033608 (Sytl4-001) 133936385-133981812 protein_coding
ENSMUST00000113294 (Sytl4-003) 133946448-133981812 protein_coding
ENSMUST00000113297 (Sytl4-002) 133936385-133981783 protein_coding
ENSMUST00000174091 (Sytl4-004) 133950306-133960990 processed_transcript
ENSMUST00000174542 (Sytl4-005) 133952354-133981809 protein_coding
ENSMUSG00000031256 (Cstf2)
cleavage stimulation factor, 3' pre-RNA subunit 2 		ENSMUST00000033609 (Cstf2-001) 134059197-134086819 protein_coding
ENSMUST00000113286 (Cstf2-007) 134059215-134075863 protein_coding
ENSMUST00000113287 (Cstf2-002) 134059187-134086046 protein_coding
ENSMUST00000136510 (Cstf2-006) 134066261-134074310 protein_coding
ENSMUST00000144483 (Cstf2-005) 134059334-134062633 protein_coding
ENSMUST00000148080 (Cstf2-008) 134059311-134061496 processed_transcript
ENSMUST00000149658 (Cstf2-003) 134059334-134086819 retained_intron
ENSMUST00000156778 (Cstf2-004) 134062397-134074273 protein_coding
ENSMUSG00000031257 (Nox1)
NADPH oxidase 1 		ENSMUST00000033610 (Nox1-001) 134086421-134111854 protein_coding
ENSMUST00000113275 (Nox1-002) 134087054-134111765 protein_coding
ENSMUST00000159231 (Nox1-004) 134107733-134137711 protein_coding
ENSMUST00000159259 (Nox1-005) 134087146-134111708 protein_coding
ENSMUST00000162833 (Nox1-003) 134107733-134221956 protein_coding
ENSMUSG00000080788 (Gm7841)
predicted gene 7841 		ENSMUST00000122108 (Gm7841-001) 134052787-134054415 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BC_0001ENSG00000101811ENST00000372972ENST00000413437ENST00000415585ENST00000475126ENSG00000102362ENST00000263033ENST00000276141ENST00000372981ENST00000372989ENST00000491326ENST00000491602ENSG00000202231ENST00000365361ENSG00000223819ENST00000446082ENSG00000238116ENST00000414579ENSG00000275320ENST00000610385CIL_0007BC_0002ENSMUSG00000031255ENSMUST00000033608ENSMUST00000113294ENSMUST00000113297ENSMUST00000174091ENSMUST00000174542ENSMUSG00000031256ENSMUST00000033609ENSMUST00000113286ENSMUST00000113287ENSMUST00000136510ENSMUST00000144483ENSMUST00000148080ENSMUST00000149658ENSMUST00000156778ENSMUSG00000031257ENSMUST00000033610ENSMUST00000113275ENSMUST00000159231ENSMUST00000159259ENSMUST00000162833ENSMUSG00000080788ENSMUST00000122108
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BC_0001ENSG00000101811ENST00000372972ENST00000413437ENST00000415585ENST00000475126ENSG00000102362ENST00000263033ENST00000276141ENST00000372981ENST00000372989ENST00000491602ENSG00000202231ENST00000365361ENSG00000223819ENST00000446082ENSG00000238116ENST00000414579ENSG00000275320ENST00000610385CIL_0007BC_0002ENSMUSG00000031255ENSMUST00000033608ENSMUST00000113294ENSMUST00000113297ENSMUST00000174542ENSMUSG00000031256ENSMUST00000033609ENSMUST00000113286ENSMUST00000113287ENSMUST00000136510ENSMUST00000144483ENSMUST00000148080ENSMUST00000149658ENSMUST00000156778ENSMUSG00000031257ENSMUST00000033610ENSMUSG00000080788ENSMUST00000122108
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101811 ENST00000372972 N/A 1.208±0.00 0.385±0.00 0.344±0.01 1.314±1.10 1.196±0.24 1.585±0.00 3.531±0.00 2.022±0.00 1.553±0.31 0.330±0.00 7.333±3.36 3.747±0.10 6.503±0.68
ENST00000413437 N/A N/A N/A 1.607±0.00 1.724±0.00 N/A N/A N/A N/A 2.052±0.00 N/A 4.525±0.00 2.897±0.00 5.375±0.00
ENST00000415585 0.447±0.00 N/A N/A 1.154±0.21 N/A 1.043±0.00 0.135±0.00 N/A N/A N/A N/A 0.689±0.00 1.253±0.00 N/A
ENST00000475126 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 0.724±0.46 N/A N/A N/A
ENSG00000102362 ENST00000263033 N/A N/A 0.791±0.00 1.368±0.75 N/A 1.628±0.00 N/A 1.344±0.00 1.849±0.00 N/A 0.093±0.00 3.726±0.00 N/A 2.275±0.00
ENST00000276141 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.389±0.00 N/A 7.294±3.76 1.804±0.04 N/A
ENST00000372981 N/A N/A N/A N/A N/A 0.702±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372989 N/A N/A N/A 1.208±0.00 N/A 3.372±0.00 1.067±0.00 1.799±1.19 1.713±0.00 N/A 0.401±0.00 2.736±1.68 1.105±0.00 1.945±0.46
ENST00000491326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491602 27.458±0.00 1.255±0.00 N/A 0.847±0.36 14.215±0.00 6.616±0.00 1.132±0.00 N/A 1.835±0.00 3.235±0.00 0.711±0.00 5.223±4.62 2.823±1.71 3.175±1.38
ENSG00000202231 ENST00000365361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.738±0.00 N/A N/A
ENSG00000223819 ENST00000446082 0.346±0.00 0.417±0.00 N/A 0.063±0.00 0.269±0.00 N/A N/A 0.029±0.00 0.078±0.00 0.027±0.00 N/A 0.347±0.14 N/A 0.190±0.00
ENSG00000238116 ENST00000414579 0.006±0.00 0.012±0.00 N/A 0.012±0.00 0.006±0.00 0.005±0.00 0.009±0.00 N/A N/A N/A N/A 0.073±0.00 N/A 0.014±0.00
ENSG00000275320 ENST00000610385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031255 ENSMUST00000033608 0.703±0.01 0.522±0.11 0.387±0.10 0.119±0.00 0.154±0.12 0.808±0.25 0.210±0.05 0.272±0.20 0.327±0.10 0.469±0.13 0.172±0.05 2.533±2.04 0.334±0.09 N/A
ENSMUST00000113294 0.455±0.00 0.437±0.22 N/A 0.034±0.00 0.189±0.03 0.476±0.09 0.080±0.02 0.175±0.04 0.147±0.08 0.250±0.03 0.047±0.01 1.887±0.64 0.085±0.00 0.553±0.04
ENSMUST00000113297 0.192±0.01 0.634±0.06 0.526±0.07 0.080±0.05 0.223±0.10 N/A 0.078±0.03 N/A 0.271±0.09 N/A 0.115±0.00 3.974±3.31 0.213±0.12 1.366±0.45
ENSMUST00000174091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174542 N/A 0.881±0.00 N/A 0.725±0.00 N/A N/A N/A N/A 0.412±0.00 N/A 0.215±0.00 N/A 1.053±0.18 N/A
ENSMUSG00000031256 ENSMUST00000033609 4.806±0.98 4.025±0.58 4.528±0.15 5.575±1.62 4.389±1.17 6.520±0.86 1.582±0.14 4.404±0.73 4.561±2.38 5.628±0.25 0.744±0.19 9.353±3.80 4.374±2.23 6.919±2.56
ENSMUST00000113286 1.968±0.35 2.301±0.04 N/A N/A 1.776±0.40 2.546±0.41 0.727±0.11 N/A 1.719±1.03 N/A 0.523±0.05 3.846±0.79 N/A 7.450±3.17
ENSMUST00000113287 1.560±0.35 2.796±0.29 1.252±0.00 10.666±0.00 1.295±0.28 2.652±0.00 0.820±0.26 1.090±0.17 1.581±0.78 N/A 0.560±0.11 3.584±1.21 4.321±2.01 1.782±0.00
ENSMUST00000136510 N/A N/A N/A 58.456±0.00 N/A N/A N/A N/A N/A N/A N/A 37.812±0.00 44.799±26.97 27.599±0.00
ENSMUST00000144483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.537±0.00
ENSMUST00000148080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.188±0.00
ENSMUST00000149658 N/A 1.139±0.09 N/A 1.925±0.55 0.594±0.00 N/A 0.228±0.01 N/A 0.379±0.07 N/A 0.197±0.01 1.172±0.33 0.320±0.00 N/A
ENSMUST00000156778 N/A 5.937±0.00 N/A 34.579±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031257 ENSMUST00000033610 N/A N/A N/A N/A N/A 5.257±1.36 N/A N/A N/A N/A 0.550±0.00 N/A N/A N/A
ENSMUST00000113275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080788 ENSMUST00000122108 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A

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