C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475126 CSTF2-003 ENSG00000101811 9606 + X:100820417-100840923 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungMuscleENST00000475126
Transcript ID Lung Muscle
ENST00000475126 0.227±0.00 0.724±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BC CIL_0007BC_0001 CGP X:100674491-100840932
CIL_0000YO CIL_0000YO_0002 CGP X:100820359-100874345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113286 Cstf2-007 protein_coding Mus_musculus 0 1003
ENSMUST00000113287 Cstf2-002 protein_coding Mus_musculus 0 1003
ENSMUST00000033609 Cstf2-001 protein_coding Mus_musculus 0 1003
ENSMUST00000149658 Cstf2-003 retained_intron Mus_musculus 0 841
ENSMUST00000144483 Cstf2-005 protein_coding Mus_musculus 0 686
ENSMUST00000148080 Cstf2-008 processed_transcript Mus_musculus 0 414
ENSMUST00000156778 Cstf2-004 protein_coding Mus_musculus 0 340
ENSMUST00000136510 Cstf2-006 protein_coding Mus_musculus 0 315

Loading