C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000YO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000044009-ENSDARG00000087574 CGP 7955 14:42835794-42893971
GeneTranscriptPositionBiotype
ENSDARG00000044009 (cstf2)
cleavage stimulation factor, 3' pre-RNA, subunit 2 		ENSDART00000056627 (cstf2-201) 42835801-42863213 protein_coding
ENSDART00000064612 (cstf2-202) 42835801-42863213 protein_coding
ENSDART00000140625 (cstf2-001) 42835794-42844318 protein_coding
ENSDARG00000087574 (nox1)
NADPH oxidase 1 		ENSDART00000086104 (nox1-202) 42878702-42893971 protein_coding
CIL_0000YO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101811-ENSG00000007952 CGP 9606 X:100820359-100874345
GeneTranscriptPositionBiotype
ENSG00000007952 (NOX1)
NADPH oxidase 1 		ENST00000217885 (NOX1-003) 100843836-100874209 protein_coding
ENST00000372960 (NOX1-201) 100843324-100874345 protein_coding
ENST00000372964 (NOX1-002) 100843333-100874209 protein_coding
ENST00000372966 (NOX1-001) 100843324-100874345 protein_coding
ENST00000427768 (NOX1-004) 100843783-100850336 protein_coding
ENSG00000101811 (CSTF2)
cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa 		ENST00000372972 (CSTF2-001) 100820401-100840918 protein_coding
ENST00000413437 (CSTF2-004) 100820536-100824257 protein_coding
ENST00000415585 (CSTF2-201) 100820359-100840932 protein_coding
ENST00000475126 (CSTF2-003) 100820417-100840923 nonsense_mediated_decay
ENSG00000202231 (SNORA9)
Small nucleolar RNA SNORA9 		ENST00000365361 (SNORA9.1-202) 100822620-100822752 snoRNA
ENSG00000239345 (HNRNPA1P26)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 26 		ENST00000457695 (HNRNPA1P26-001) 100855288-100856379 processed_pseudogene
CIL_0000YO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031256-ENSMUSG00000031257 CGP 10090 X:134059187-134221956
GeneTranscriptPositionBiotype
ENSMUSG00000031256 (Cstf2)
cleavage stimulation factor, 3' pre-RNA subunit 2 		ENSMUST00000033609 (Cstf2-001) 134059197-134086819 protein_coding
ENSMUST00000113286 (Cstf2-007) 134059215-134075863 protein_coding
ENSMUST00000113287 (Cstf2-002) 134059187-134086046 protein_coding
ENSMUST00000136510 (Cstf2-006) 134066261-134074310 protein_coding
ENSMUST00000144483 (Cstf2-005) 134059334-134062633 protein_coding
ENSMUST00000148080 (Cstf2-008) 134059311-134061496 processed_transcript
ENSMUST00000149658 (Cstf2-003) 134059334-134086819 retained_intron
ENSMUST00000156778 (Cstf2-004) 134062397-134074273 protein_coding
ENSMUSG00000031257 (Nox1)
NADPH oxidase 1 		ENSMUST00000033610 (Nox1-001) 134086421-134111854 protein_coding
ENSMUST00000113275 (Nox1-002) 134087054-134111765 protein_coding
ENSMUST00000159231 (Nox1-004) 134107733-134137711 protein_coding
ENSMUST00000159259 (Nox1-005) 134087146-134111708 protein_coding
ENSMUST00000162833 (Nox1-003) 134107733-134221956 protein_coding
ENSMUSG00000031258 (Xkrx)
X Kell blood group precursor related X linked 		ENSMUST00000033611 (Xkrx-001) 134149043-134161928 protein_coding
ENSMUST00000148722 (Xkrx-002) 134151110-134162076 processed_transcript
ENSMUSG00000052549 (Arl13a)
ADP-ribosylation factor-like 13A 		ENSMUST00000064476 (Arl13a-001) 134187501-134208028 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YO_0001ENSDARG00000044009ENSDART00000056627ENSDART00000064612ENSDART00000140625ENSDARG00000087574ENSDART00000086104CIL_0000YO_0002ENSG00000007952ENST00000217885ENST00000372960ENST00000372964ENST00000372966ENST00000427768ENSG00000101811ENST00000372972ENST00000413437ENST00000415585ENST00000475126ENSG00000202231ENST00000365361ENSG00000239345ENST00000457695CIL_0000YO_0003ENSMUSG00000031256ENSMUST00000033609ENSMUST00000113286ENSMUST00000113287ENSMUST00000136510ENSMUST00000144483ENSMUST00000148080ENSMUST00000149658ENSMUST00000156778ENSMUSG00000031257ENSMUST00000033610ENSMUST00000113275ENSMUST00000159231ENSMUST00000159259ENSMUST00000162833ENSMUSG00000031258ENSMUST00000033611ENSMUST00000148722ENSMUSG00000052549ENSMUST00000064476
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YO_0001ENSDARG00000044009ENSDART00000056627ENSDART00000064612ENSDARG00000087574ENSDART00000086104CIL_0000YO_0002ENSG00000007952ENST00000217885ENST00000372960ENST00000372964ENST00000372966ENST00000427768ENSG00000101811ENST00000372972ENST00000413437ENST00000415585ENST00000475126ENSG00000202231ENST00000365361ENSG00000239345ENST00000457695CIL_0000YO_0003ENSMUSG00000031256ENSMUST00000033609ENSMUST00000113286ENSMUST00000113287ENSMUST00000136510ENSMUST00000144483ENSMUST00000148080ENSMUST00000149658ENSMUST00000156778ENSMUSG00000031257ENSMUST00000033610ENSMUSG00000031258ENSMUST00000033611ENSMUST00000148722ENSMUSG00000052549ENSMUST00000064476
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000044009 ENSDART00000056627 N/A N/A N/A 0.372±0.28 N/A N/A 0.715±0.00 0.187±0.00 0.035±0.00 N/A 0.515±0.00 N/A N/A N/A
ENSDART00000064612 N/A N/A N/A 0.423±0.00 N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000087574 ENSDART00000086104 N/A N/A N/A 0.066±0.00 N/A N/A 0.034±0.00 0.072±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000007952 ENST00000217885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.754±0.00 0.031±0.00 N/A
ENST00000372960 0.015±0.00 N/A N/A 0.028±0.00 0.604±0.00 1.962±0.00 N/A N/A N/A N/A N/A 0.991±0.00 N/A 0.009±0.00
ENST00000372964 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.210±0.00 N/A N/A 0.075±0.00 N/A
ENST00000372966 N/A N/A N/A N/A N/A 3.245±2.53 N/A N/A N/A N/A N/A 2.610±1.31 N/A 0.009±0.00
ENST00000427768 N/A N/A N/A N/A N/A N/A N/A N/A 0.416±0.00 N/A N/A N/A N/A N/A
ENSG00000101811 ENST00000372972 N/A 1.208±0.00 0.385±0.00 0.344±0.01 1.314±1.10 1.196±0.24 1.585±0.00 3.531±0.00 2.022±0.00 1.553±0.31 0.330±0.00 7.333±3.36 3.747±0.10 6.503±0.68
ENST00000413437 N/A N/A N/A 1.607±0.00 1.724±0.00 N/A N/A N/A N/A 2.052±0.00 N/A 4.525±0.00 2.897±0.00 5.375±0.00
ENST00000415585 0.447±0.00 N/A N/A 1.154±0.21 N/A 1.043±0.00 0.135±0.00 N/A N/A N/A N/A 0.689±0.00 1.253±0.00 N/A
ENST00000475126 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 0.724±0.46 N/A N/A N/A
ENSG00000202231 ENST00000365361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.738±0.00 N/A N/A
ENSG00000239345 ENST00000457695 0.013±0.00 0.068±0.00 N/A 0.057±0.00 N/A 0.326±0.16 0.050±0.00 N/A N/A N/A 0.048±0.00 0.128±0.13 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031256 ENSMUST00000033609 4.806±0.98 4.025±0.58 4.528±0.15 5.575±1.62 4.389±1.17 6.520±0.86 1.582±0.14 4.404±0.73 4.561±2.38 5.628±0.25 0.744±0.19 9.353±3.80 4.374±2.23 6.919±2.56
ENSMUST00000113286 1.968±0.35 2.301±0.04 N/A N/A 1.776±0.40 2.546±0.41 0.727±0.11 N/A 1.719±1.03 N/A 0.523±0.05 3.846±0.79 N/A 7.450±3.17
ENSMUST00000113287 1.560±0.35 2.796±0.29 1.252±0.00 10.666±0.00 1.295±0.28 2.652±0.00 0.820±0.26 1.090±0.17 1.581±0.78 N/A 0.560±0.11 3.584±1.21 4.321±2.01 1.782±0.00
ENSMUST00000136510 N/A N/A N/A 58.456±0.00 N/A N/A N/A N/A N/A N/A N/A 37.812±0.00 44.799±26.97 27.599±0.00
ENSMUST00000144483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.537±0.00
ENSMUST00000148080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.188±0.00
ENSMUST00000149658 N/A 1.139±0.09 N/A 1.925±0.55 0.594±0.00 N/A 0.228±0.01 N/A 0.379±0.07 N/A 0.197±0.01 1.172±0.33 0.320±0.00 N/A
ENSMUST00000156778 N/A 5.937±0.00 N/A 34.579±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031257 ENSMUST00000033610 N/A N/A N/A N/A N/A 5.257±1.36 N/A N/A N/A N/A 0.550±0.00 N/A N/A N/A
ENSMUST00000113275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031258 ENSMUST00000033611 0.257±0.08 0.546±0.07 1.564±0.17 0.269±0.15 2.108±0.96 0.225±0.13 0.455±0.06 0.346±0.07 0.072±0.03 0.749±0.22 0.340±0.08 0.315±0.12 0.305±0.11 0.094±0.03
ENSMUST00000148722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.200±0.02
ENSMUSG00000052549 ENSMUST00000064476 N/A N/A 0.008±0.00 0.027±0.03 0.059±0.03 N/A 0.018±0.00 0.046±0.02 0.030±0.03 N/A 0.017±0.00 N/A 0.011±0.01 7.602±0.48

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