C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage stimulation factor, 3' pre-RNA subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031256 Cstf2 10090 + X:134059187-134086819 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033609 Cstf2-001 134059197-134086819 protein_coding
  ENSMUST00000113286 Cstf2-007 134059215-134075863 protein_coding
  ENSMUST00000113287 Cstf2-002 134059187-134086046 protein_coding
  ENSMUST00000136510 Cstf2-006 134066261-134074310 protein_coding
  ENSMUST00000144483 Cstf2-005 134059334-134062633 protein_coding
  ENSMUST00000148080 Cstf2-008 134059311-134061496 processed_transcript
  ENSMUST00000149658 Cstf2-003 134059334-134086819 retained_intron
  ENSMUST00000156778 Cstf2-004 134062397-134074273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033609ENSMUST00000113286ENSMUST00000113287ENSMUST00000136510ENSMUST00000144483ENSMUST00000148080ENSMUST00000149658ENSMUST00000156778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033609 4.806±0.98 4.025±0.58 4.528±0.15 5.575±1.62 4.389±1.17 6.520±0.86 1.582±0.14 4.404±0.73 4.561±2.38 5.628±0.25 0.744±0.19 9.353±3.80 4.374±2.23 6.919±2.56
ENSMUST00000113286 1.968±0.35 2.301±0.04 N/A N/A 1.776±0.40 2.546±0.41 0.727±0.11 N/A 1.719±1.03 N/A 0.523±0.05 3.846±0.79 N/A 7.450±3.17
ENSMUST00000113287 1.560±0.35 2.796±0.29 1.252±0.00 10.666±0.00 1.295±0.28 2.652±0.00 0.820±0.26 1.090±0.17 1.581±0.78 N/A 0.560±0.11 3.584±1.21 4.321±2.01 1.782±0.00
ENSMUST00000136510 N/A N/A N/A 58.456±0.00 N/A N/A N/A N/A N/A N/A N/A 37.812±0.00 44.799±26.97 27.599±0.00
ENSMUST00000144483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.537±0.00
ENSMUST00000148080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.188±0.00
ENSMUST00000149658 N/A 1.139±0.09 N/A 1.925±0.55 0.594±0.00 N/A 0.228±0.01 N/A 0.379±0.07 N/A 0.197±0.01 1.172±0.33 0.320±0.00 N/A
ENSMUST00000156778 N/A 5.937±0.00 N/A 34.579±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BC CIL_0007BC_0002 CGP X:133936385-134086819
CIL_0000YO CIL_0000YO_0003 CGP X:134059187-134221956

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding
GO:0071920 ISS cleavage body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044009 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2 protein_coding Danio_rerio
ENSDARG00000090788 cstf2 cleavage stimulation factor, 3' pre-RNA, subunit 2 protein_coding Danio_rerio
ENSG00000101811 CSTF2 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein_coding Homo_sapiens

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