C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415585 CSTF2-201 ENSG00000101811 9606 + X:100820359-100840932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartOvaryPlacentaENST00000415585
Transcript ID Adipose Brain Colon Heart Ovary Placenta
ENST00000415585 0.447±0.00 1.154±0.21 1.043±0.00 0.135±0.00 0.689±0.00 1.253±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BC CIL_0007BC_0001 CGP X:100674491-100840932
CIL_0000YO CIL_0000YO_0002 CGP X:100820359-100874345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113287 Cstf2-002 protein_coding Mus_musculus 0 1238
ENSMUST00000113286 Cstf2-007 protein_coding Mus_musculus 0 1236
ENSMUST00000033609 Cstf2-001 protein_coding Mus_musculus 0 1236
ENSMUST00000149658 Cstf2-003 retained_intron Mus_musculus 0 1064
ENSMUST00000156778 Cstf2-004 protein_coding Mus_musculus 0 728
ENSMUST00000144483 Cstf2-005 protein_coding Mus_musculus 0 686
ENSMUST00000136510 Cstf2-006 protein_coding Mus_musculus 0 630
ENSMUST00000148080 Cstf2-008 processed_transcript Mus_musculus 0 440

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