C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372972 CSTF2-001 ENSG00000101811 9606 + X:100820401-100840918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372972
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372972 1.208±0.00 0.385±0.00 0.344±0.01 1.314±1.10 1.196±0.24 1.585±0.00 3.531±0.00 2.022±0.00 1.553±0.31 0.330±0.00 7.333±3.36 3.747±0.10 6.503±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BC CIL_0007BC_0001 CGP X:100674491-100840932
CIL_0000YO CIL_0000YO_0002 CGP X:100820359-100874345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 TAS mRNA polyadenylation
GO:0006379 TAS mRNA cleavage
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0071920 IDA cleavage body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033609 Cstf2-001 protein_coding Mus_musculus 0 2270
ENSMUST00000113286 Cstf2-007 protein_coding Mus_musculus 0 1860
ENSMUST00000113287 Cstf2-002 protein_coding Mus_musculus 0 1214
ENSMUST00000149658 Cstf2-003 retained_intron Mus_musculus 0 1061
ENSMUST00000144483 Cstf2-005 protein_coding Mus_musculus 0 686
ENSMUST00000156778 Cstf2-004 protein_coding Mus_musculus 0 547
ENSMUST00000148080 Cstf2-008 processed_transcript Mus_musculus 0 418
ENSMUST00000136510 Cstf2-006 protein_coding Mus_musculus 0 315

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