C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000102038 SMARCA1 9606 - X:129446501-129523500 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371121 SMARCA1-005 129446846-129523405 protein_coding
  ENST00000371122 SMARCA1-004 129446505-129523500 protein_coding
  ENST00000371123 SMARCA1-006 129446506-129523485 protein_coding
  ENST00000478420 SMARCA1-003 129508055-129523246 processed_transcript
  ENST00000617310 SMARCA1-007 129446501-129523464 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371121ENST00000371122ENST00000371123ENST00000617310
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371121 3.624±0.00 3.299±0.00 N/A 3.481±0.00 3.035±0.00 6.323±0.00 3.468±0.00 5.607±0.00 2.055±0.00 4.853±0.03 1.515±0.55 5.335±3.79 6.585±6.81 12.074±1.68
ENST00000371122 N/A N/A 2.327±0.00 1.638±0.06 1.462±0.70 0.521±0.00 0.943±0.18 3.295±0.00 2.411±0.64 1.237±0.00 N/A 3.114±1.85 2.801±2.35 10.158±3.51
ENST00000371123 1.633±0.00 N/A N/A 4.876±1.53 1.311±0.00 0.729±0.00 2.669±1.04 5.458±1.93 4.187±0.00 3.175±0.00 2.469±0.00 5.861±2.90 3.888±0.94 15.173±1.82
ENST00000617310 N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0001 CGP X:128050962-129523500
CIL_0000A1 CIL_0000A1_0001 CGP X:129446501-129592561

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000733 IDA DNA strand renaturation
GO:0000790 IEA nuclear chromatin
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006200 IDA ATP catabolic process
GO:0006338 IEA chromatin remodeling
GO:0006351 IMP transcription, DNA-templated
GO:0007420 IMP brain development
GO:0008094 IDA DNA-dependent ATPase activity
GO:0016589 IDA NURF complex
GO:0016787 IEA hydrolase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030182 IEA neuron differentiation
GO:0031491 IEA nucleosome binding
GO:0036310 IDA annealing helicase activity
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0070615 IDA nucleosome-dependent ATPase activity
GO:0090537 IDA CERF complex
GO:2000177 IEA regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012776 smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein_coding Danio_rerio
ENSMUSG00000031099 Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein_coding Mus_musculus

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