C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371123 SMARCA1-006 ENSG00000102038 9606 - X:129446506-129523485 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371123
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371123 1.633±0.00 4.876±1.53 1.311±0.00 0.729±0.00 2.669±1.04 5.458±1.93 4.187±0.00 3.175±0.00 2.469±0.00 5.861±2.90 3.888±0.94 15.173±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0001 CGP X:128050962-129523500
CIL_0000A1 CIL_0000A1_0001 CGP X:129446501-129592561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006338 IEA chromatin remodeling
GO:0016787 IEA hydrolase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031491 IEA nucleosome binding
GO:0043044 IEA ATP-dependent chromatin remodeling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101616 Smarca1-002 protein_coding Mus_musculus 0 5323
ENSMUST00000088973 Smarca1-007 protein_coding Mus_musculus 0 4298
ENSMUST00000077569 Smarca1-001 protein_coding Mus_musculus 0 4298
ENSMUST00000153548 Smarca1-004 protein_coding Mus_musculus 0 2122
ENSMUST00000141084 Smarca1-003 protein_coding Mus_musculus 0 1413
ENSMUST00000153587 Smarca1-005 protein_coding Mus_musculus 0 268

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