C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617310 SMARCA1-007 ENSG00000102038 9606 - X:129446501-129523464 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000617310
Transcript ID Bladder
ENST00000617310 0.372±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0001 CGP X:128050962-129523500
CIL_0000A1 CIL_0000A1_0001 CGP X:129446501-129592561

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088973 Smarca1-007 protein_coding Mus_musculus 0 3033
ENSMUST00000101616 Smarca1-002 protein_coding Mus_musculus 0 3033
ENSMUST00000077569 Smarca1-001 protein_coding Mus_musculus 0 3033
ENSMUST00000153548 Smarca1-004 protein_coding Mus_musculus 0 2122
ENSMUST00000141084 Smarca1-003 protein_coding Mus_musculus 0 1413
ENSMUST00000153587 Smarca1-005 protein_coding Mus_musculus 0 268

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