C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371122 SMARCA1-004 ENSG00000102038 9606 - X:129446505-129523500 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000371122
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000371122 2.327±0.00 1.638±0.06 1.462±0.70 0.521±0.00 0.943±0.18 3.295±0.00 2.411±0.64 1.237±0.00 3.114±1.85 2.801±2.35 10.158±3.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0001 CGP X:128050962-129523500
CIL_0000A1 CIL_0000A1_0001 CGP X:129446501-129592561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000733 IDA DNA strand renaturation
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0006200 IDA ATP catabolic process
GO:0006338 IDA:IEA chromatin remodeling
GO:0006351 IMP transcription, DNA-templated
GO:0007420 IMP brain development
GO:0008094 IDA DNA-dependent ATPase activity
GO:0016589 IDA NURF complex
GO:0016787 IEA hydrolase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030182 ISS neuron differentiation
GO:0031491 IEA nucleosome binding
GO:0036310 IDA annealing helicase activity
GO:0043044 IDA:IEA ATP-dependent chromatin remodeling
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0070615 IDA nucleosome-dependent ATPase activity
GO:0090537 IDA CERF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153548 Smarca1-004 protein_coding Mus_musculus 0 3049
ENSMUST00000088973 Smarca1-007 protein_coding Mus_musculus 0 2231
ENSMUST00000077569 Smarca1-001 protein_coding Mus_musculus 0 2231
ENSMUST00000101616 Smarca1-002 protein_coding Mus_musculus 0 2174
ENSMUST00000141084 Smarca1-003 protein_coding Mus_musculus 0 1413
ENSMUST00000153587 Smarca1-005 protein_coding Mus_musculus 0 268

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