C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00000W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123165-ENSG00000102038 CGP 9606 X:128050962-129523500
GeneTranscriptPositionBiotype
ENSG00000102038 (SMARCA1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 		ENST00000371121 (SMARCA1-005) 129446846-129523405 protein_coding
ENST00000371122 (SMARCA1-004) 129446505-129523500 protein_coding
ENST00000371123 (SMARCA1-006) 129446506-129523485 protein_coding
ENST00000478420 (SMARCA1-003) 129508055-129523246 processed_transcript
ENST00000617310 (SMARCA1-007) 129446501-129523464 retained_intron
ENSG00000123165 (ACTRT1)
actin-related protein T1 		ENST00000371124 (ACTRT1-001) 128050962-128052398 protein_coding
ENSG00000218728 (KRT18P44)
keratin 18 pseudogene 44 		ENST00000416086 (KRT18P44-001) 128714506-128715790 processed_pseudogene
ENSG00000225689 (RP1-30E17.2)
 ENST00000449485 (RP1-30E17.2-001) 128323620-128600468 lincRNA
ENSG00000226339 (RPS26P56)
ribosomal protein S26 pseudogene 56 		ENST00000444468 (RPS26P56-001) 129408382-129408621 processed_pseudogene
ENSG00000226802 (RP11-72I18.1)
 ENST00000429864 (RP11-72I18.1-001) 128440929-128441785 processed_pseudogene
ENSG00000234592 (RP11-41L14.1)
 ENST00000458202 (RP11-41L14.1-001) 129041536-129043183 processed_pseudogene
ENSG00000235735 (RPL7AP72)
ribosomal protein L7a pseudogene 72 		ENST00000417266 (RPL7AP72-001) 128313281-128314048 processed_pseudogene
CIL_00000W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046615-ENSMUSG00000031099 CGP 10090 X:46329007-47892974
GeneTranscriptPositionBiotype
ENSMUSG00000031099 (Smarca1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 		ENSMUST00000077569 (Smarca1-001) 47809368-47892519 protein_coding
ENSMUST00000088973 (Smarca1-007) 47809633-47892552 protein_coding
ENSMUST00000101616 (Smarca1-002) 47809370-47892519 protein_coding
ENSMUST00000140756 (Smarca1-006) 47889808-47892974 processed_transcript
ENSMUST00000141084 (Smarca1-003) 47874330-47892432 protein_coding
ENSMUST00000153548 (Smarca1-004) 47841930-47892396 protein_coding
ENSMUST00000153587 (Smarca1-005) 47887141-47892941 protein_coding
ENSMUSG00000046615 (Actrt1)
actin-related protein T1 		ENSMUST00000059466 (Actrt1-001) 46329007-46330345 protein_coding
ENSMUSG00000063816 (Gm4987)
predicted gene 4987 		ENSMUST00000078326 (Gm4987-001) 46455887-46456294 processed_pseudogene
ENSMUSG00000081551 (Gm14654)
predicted gene 14654 		ENSMUST00000118620 (Gm14654-001) 46361460-46361906 processed_pseudogene
ENSMUSG00000082204 (Gm7722)
predicted gene 7722 		ENSMUST00000120646 (Gm7722-001) 46535855-46536625 unprocessed_pseudogene
ENSMUSG00000082426 (Gm14610)
predicted gene 14610 		ENSMUST00000118358 (Gm14610-001) 47387020-47387985 processed_pseudogene
ENSMUSG00000082894 (Gm6480)
predicted pseudogene 6480 		ENSMUST00000121552 (Gm6480-001) 47724528-47726413 processed_pseudogene
ENSMUSG00000083094 (Gm4908)
predicted gene 4908 		ENSMUST00000121923 (Gm4908-001) 47471808-47472812 processed_pseudogene
ENSMUSG00000083499 (Gm14609)
predicted gene 14609 		ENSMUST00000122176 (Gm14609-001) 47380433-47381334 processed_pseudogene
ENSMUSG00000084348 (Gm14608)
predicted gene 14608 		ENSMUST00000120030 (Gm14608-001) 47586018-47587570 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00000W_0001ENSG00000102038ENST00000371121ENST00000371122ENST00000371123ENST00000478420ENST00000617310ENSG00000123165ENST00000371124ENSG00000218728ENST00000416086ENSG00000225689ENST00000449485ENSG00000226339ENST00000444468ENSG00000226802ENST00000429864ENSG00000234592ENST00000458202ENSG00000235735ENST00000417266CIL_00000W_0002ENSMUSG00000031099ENSMUST00000077569ENSMUST00000088973ENSMUST00000101616ENSMUST00000140756ENSMUST00000141084ENSMUST00000153548ENSMUST00000153587ENSMUSG00000046615ENSMUST00000059466ENSMUSG00000063816ENSMUST00000078326ENSMUSG00000081551ENSMUST00000118620ENSMUSG00000082204ENSMUST00000120646ENSMUSG00000082426ENSMUST00000118358ENSMUSG00000082894ENSMUST00000121552ENSMUSG00000083094ENSMUST00000121923ENSMUSG00000083499ENSMUST00000122176ENSMUSG00000084348ENSMUST00000120030
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00000W_0001ENSG00000102038ENST00000371121ENST00000371122ENST00000371123ENST00000617310ENSG00000123165ENST00000371124ENSG00000218728ENST00000416086ENSG00000225689ENST00000449485ENSG00000226339ENST00000444468ENSG00000226802ENST00000429864ENSG00000234592ENST00000458202ENSG00000235735ENST00000417266CIL_00000W_0002ENSMUSG00000031099ENSMUST00000077569ENSMUST00000088973ENSMUST00000101616ENSMUST00000153548ENSMUST00000153587ENSMUSG00000046615ENSMUST00000059466ENSMUSG00000063816ENSMUST00000078326ENSMUSG00000081551ENSMUST00000118620ENSMUSG00000082204ENSMUST00000120646ENSMUSG00000082426ENSMUST00000118358ENSMUSG00000082894ENSMUST00000121552ENSMUSG00000083094ENSMUST00000121923ENSMUSG00000083499ENSMUST00000122176ENSMUSG00000084348ENSMUST00000120030
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102038 ENST00000371121 3.624±0.00 3.299±0.00 N/A 3.481±0.00 3.035±0.00 6.323±0.00 3.468±0.00 5.607±0.00 2.055±0.00 4.853±0.03 1.515±0.55 5.335±3.79 6.585±6.81 12.074±1.68
ENST00000371122 N/A N/A 2.327±0.00 1.638±0.06 1.462±0.70 0.521±0.00 0.943±0.18 3.295±0.00 2.411±0.64 1.237±0.00 N/A 3.114±1.85 2.801±2.35 10.158±3.51
ENST00000371123 1.633±0.00 N/A N/A 4.876±1.53 1.311±0.00 0.729±0.00 2.669±1.04 5.458±1.93 4.187±0.00 3.175±0.00 2.469±0.00 5.861±2.90 3.888±0.94 15.173±1.82
ENST00000478420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617310 N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000123165 ENST00000371124 N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.286±0.11
ENSG00000218728 ENST00000416086 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A 0.072±0.00 N/A N/A N/A N/A N/A
ENSG00000225689 ENST00000449485 N/A N/A N/A 0.574±0.00 N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A 0.123±0.00
ENSG00000226339 ENST00000444468 N/A 0.214±0.00 N/A N/A 0.145±0.00 0.068±0.00 0.065±0.00 0.214±0.00 N/A 0.066±0.00 0.062±0.00 0.174±0.00 N/A 0.064±0.00
ENSG00000226802 ENST00000429864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00
ENSG00000234592 ENST00000458202 N/A N/A N/A 0.193±0.00 N/A 0.123±0.00 0.026±0.00 N/A 0.171±0.00 N/A 0.012±0.00 N/A 0.041±0.00 0.039±0.00
ENSG00000235735 ENST00000417266 N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031099 ENSMUST00000077569 N/A 0.714±0.00 N/A N/A N/A 0.040±0.02 N/A 0.037±0.01 N/A N/A N/A 4.770±0.00 0.241±0.00 N/A
ENSMUST00000088973 0.166±0.13 1.767±1.77 0.200±0.07 3.624±1.42 0.452±0.22 0.166±0.02 0.151±0.04 0.059±0.03 0.451±0.33 0.235±0.03 0.227±0.08 6.681±4.16 0.925±0.64 0.593±0.18
ENSMUST00000101616 0.030±0.00 N/A 0.295±0.03 3.055±1.88 0.180±0.00 0.037±0.02 0.058±0.00 0.038±0.01 0.411±0.09 N/A 0.099±0.06 7.756±3.87 1.605±0.51 1.022±0.52
ENSMUST00000140756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153548 0.080±0.02 N/A N/A 6.410±0.00 0.487±0.00 0.025±0.00 N/A 0.082±0.05 0.048±0.02 N/A N/A 21.414±9.87 1.130±0.11 0.486±0.34
ENSMUST00000153587 1.168±0.69 3.131±1.15 N/A N/A 0.419±0.00 0.223±0.01 N/A 0.255±0.06 N/A 0.754±0.00 N/A 7.484±1.01 N/A N/A
ENSMUSG00000046615 ENSMUST00000059466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.204±0.92
ENSMUSG00000063816 ENSMUST00000078326 0.138±0.00 N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 0.121±0.00
ENSMUSG00000081551 ENSMUST00000118620 0.615±0.34 1.529±0.83 1.211±0.23 0.585±0.36 1.472±1.16 1.811±0.71 0.514±0.29 1.031±0.65 0.693±0.58 1.224±0.37 0.107±0.02 2.720±2.65 1.018±0.59 1.476±0.49
ENSMUSG00000082204 ENSMUST00000120646 0.045±0.00 N/A 0.012±0.00 N/A 0.072±0.02 N/A 0.062±0.02 0.044±0.00 0.042±0.03 N/A N/A 0.303±0.00 0.008±0.00 N/A
ENSMUSG00000082426 ENSMUST00000118358 N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082894 ENSMUST00000121552 0.548±0.22 0.550±0.12 0.184±0.02 0.880±0.70 0.751±0.08 0.696±0.28 0.356±0.05 0.472±0.11 0.226±0.14 0.677±0.17 0.067±0.03 0.595±0.37 0.387±0.19 1.152±0.10
ENSMUSG00000083094 ENSMUST00000121923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.02
ENSMUSG00000083499 ENSMUST00000122176 N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.123±0.02
ENSMUSG00000084348 ENSMUST00000120030 0.023±0.00 N/A N/A 0.010±0.01 N/A N/A N/A N/A 0.012±0.00 0.038±0.00 N/A 0.019±0.00 N/A 0.026±0.00

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