C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031099 Smarca1 10090 - X:47809368-47892974 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077569 Smarca1-001 47809368-47892519 protein_coding
  ENSMUST00000088973 Smarca1-007 47809633-47892552 protein_coding
  ENSMUST00000101616 Smarca1-002 47809370-47892519 protein_coding
  ENSMUST00000140756 Smarca1-006 47889808-47892974 processed_transcript
  ENSMUST00000141084 Smarca1-003 47874330-47892432 protein_coding
  ENSMUST00000153548 Smarca1-004 47841930-47892396 protein_coding
  ENSMUST00000153587 Smarca1-005 47887141-47892941 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077569ENSMUST00000088973ENSMUST00000101616ENSMUST00000153548ENSMUST00000153587
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077569 N/A 0.714±0.00 N/A N/A N/A 0.040±0.02 N/A 0.037±0.01 N/A N/A N/A 4.770±0.00 0.241±0.00 N/A
ENSMUST00000088973 0.166±0.13 1.767±1.77 0.200±0.07 3.624±1.42 0.452±0.22 0.166±0.02 0.151±0.04 0.059±0.03 0.451±0.33 0.235±0.03 0.227±0.08 6.681±4.16 0.925±0.64 0.593±0.18
ENSMUST00000101616 0.030±0.00 N/A 0.295±0.03 3.055±1.88 0.180±0.00 0.037±0.02 0.058±0.00 0.038±0.01 0.411±0.09 N/A 0.099±0.06 7.756±3.87 1.605±0.51 1.022±0.52
ENSMUST00000153548 0.080±0.02 N/A N/A 6.410±0.00 0.487±0.00 0.025±0.00 N/A 0.082±0.05 0.048±0.02 N/A N/A 21.414±9.87 1.130±0.11 0.486±0.34
ENSMUST00000153587 1.168±0.69 3.131±1.15 N/A N/A 0.419±0.00 0.223±0.01 N/A 0.255±0.06 N/A 0.754±0.00 N/A 7.484±1.01 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000W CIL_00000W_0002 CGP X:46329007-47892974
CIL_0000A1 CIL_0000A1_0002 CGP X:47809368-47965868

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0006338 ISS chromatin remodeling
GO:0006351 ISS transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007420 ISS brain development
GO:0008094 ISS DNA-dependent ATPase activity
GO:0008152 IEA metabolic process
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0030182 IMP neuron differentiation
GO:0031491 IEA nucleosome binding
GO:0036310 ISS annealing helicase activity
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:2000177 IGI regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012776 smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein_coding Danio_rerio
ENSG00000102038 SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein_coding Homo_sapiens

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