C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA polymerase II associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103932 RPAP1 9606 - 15:41517176-41544269 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304330 RPAP1-001 41517176-41544259 protein_coding
  ENST00000561603 RPAP1-004 41517176-41544257 protein_coding
  ENST00000561631 RPAP1-013 41523948-41525207 retained_intron
  ENST00000562303 RPAP1-005 41517179-41544245 nonsense_mediated_decay
  ENST00000563293 RPAP1-011 41534805-41536375 retained_intron
  ENST00000564934 RPAP1-014 41522506-41523844 retained_intron
  ENST00000565035 RPAP1-012 41523779-41526970 protein_coding
  ENST00000565167 RPAP1-006 41517176-41521791 retained_intron
  ENST00000566863 RPAP1-008 41536163-41544269 protein_coding
  ENST00000567866 RPAP1-010 41535512-41544250 protein_coding
  ENST00000568413 RPAP1-015 41527988-41533394 processed_transcript
  ENST00000569829 RPAP1-009 41536653-41544266 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304330ENST00000561603ENST00000561631ENST00000562303ENST00000565167ENST00000569829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304330 4.363±0.00 2.535±0.00 N/A 1.664±1.06 2.759±0.00 1.121±0.00 4.032±0.00 1.719±0.00 0.425±0.00 1.546±0.21 5.090±3.88 5.176±1.51 3.738±1.49 4.260±0.80
ENST00000561603 N/A 1.050±0.00 0.756±0.00 N/A 0.846±0.00 1.512±0.45 0.697±0.00 1.288±0.00 1.131±0.27 N/A N/A 3.606±1.24 2.075±0.00 N/A
ENST00000561631 N/A N/A N/A 4.729±0.00 N/A N/A N/A 7.038±0.00 N/A N/A 8.454±0.00 N/A N/A N/A
ENST00000562303 N/A N/A N/A N/A 0.554±0.26 N/A N/A 0.519±0.00 N/A N/A N/A N/A N/A N/A
ENST00000565167 N/A 4.069±0.00 N/A 1.845±0.00 N/A 3.761±0.00 2.248±0.00 2.099±0.00 3.821±0.00 1.580±0.00 5.628±0.00 4.713±1.90 2.635±0.14 4.652±0.00
ENST00000569829 N/A N/A N/A N/A N/A 2.290±0.00 N/A N/A 1.493±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0002 CGP 15:41503638-41544269
CIL_0005F5 CIL_0005F5_0001 CGP 15:41517176-41583586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005488 IEA binding
GO:0005634 IEA nucleus
GO:0032774 IEA RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075072 rpap1 RNA polymerase II associated protein 1 protein_coding Danio_rerio
ENSMUSG00000034032 Rpap1 RNA polymerase II associated protein 1 protein_coding Mus_musculus

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