C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000304330 RPAP1-001 ENSG00000103932 9606 - 15:41517176-41544259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304330
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304330 4.363±0.00 2.535±0.00 1.664±1.06 2.759±0.00 1.121±0.00 4.032±0.00 1.719±0.00 0.425±0.00 1.546±0.21 5.090±3.88 5.176±1.51 3.738±1.49 4.260±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0002 CGP 15:41503638-41544269
CIL_0005F5 CIL_0005F5_0001 CGP 15:41517176-41583586

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005488 IEA binding
GO:0005634 IEA nucleus
GO:0032774 IEA RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136419 Rpap1-005 nonsense_mediated_decay Mus_musculus 0 3101
ENSMUST00000048493 Rpap1-002 protein_coding Mus_musculus 0 3101
ENSMUST00000099529 Rpap1-001 protein_coding Mus_musculus 0 3101
ENSMUST00000110793 Rpap1-006 protein_coding Mus_musculus 0 3101
ENSMUST00000139311 Rpap1-003 retained_intron Mus_musculus 0 2745
ENSMUST00000184294 Rpap1-004 nonsense_mediated_decay Mus_musculus 0 1576
ENSMUST00000156506 Rpap1-007 retained_intron Mus_musculus 0 662
ENSMUST00000141800 Rpap1-008 processed_transcript Mus_musculus 0 435

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