C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000565167 RPAP1-006 ENSG00000103932 9606 - 15:41517176-41521791 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000565167
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000565167 4.069±0.00 1.845±0.00 3.761±0.00 2.248±0.00 2.099±0.00 3.821±0.00 1.580±0.00 5.628±0.00 4.713±1.90 2.635±0.14 4.652±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0002 CGP 15:41503638-41544269
CIL_0005F5 CIL_0005F5_0001 CGP 15:41517176-41583586

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136419 Rpap1-005 nonsense_mediated_decay Mus_musculus 0 950
ENSMUST00000048493 Rpap1-002 protein_coding Mus_musculus 0 950
ENSMUST00000099529 Rpap1-001 protein_coding Mus_musculus 0 950
ENSMUST00000110793 Rpap1-006 protein_coding Mus_musculus 0 950
ENSMUST00000139311 Rpap1-003 retained_intron Mus_musculus 0 771

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