C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005IS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000042861-ENSDARG00000075072 CGP 7955 17:31459694-31638825
GeneTranscriptPositionBiotype
ENSDARG00000042861 (ltk)
leukocyte tyrosine kinase 		ENSDART00000061547 (ltk-002) 31459817-31542579 protein_coding
ENSDART00000062907 (ltk-001) 31459694-31542579 protein_coding
ENSDARG00000075072 (rpap1)
RNA polymerase II associated protein 1 		ENSDART00000110167 (rpap1-001) 31594916-31638825 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005IS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000062524-ENSG00000103932 CGP 9606 15:41503638-41544269
GeneTranscriptPositionBiotype
ENSG00000062524 (LTK)
leukocyte receptor tyrosine kinase 		ENST00000263800 (LTK-001) 41503642-41513806 protein_coding
ENST00000355166 (LTK-002) 41503638-41513879 protein_coding
ENST00000453182 (LTK-004) 41503967-41513887 protein_coding
ENST00000561619 (LTK-005) 41503951-41513796 protein_coding
ENST00000563518 (LTK-003) 41503642-41513860 retained_intron
ENST00000569283 (LTK-006) 41505258-41508236 retained_intron
ENSG00000103932 (RPAP1)
RNA polymerase II associated protein 1 		ENST00000304330 (RPAP1-001) 41517176-41544259 protein_coding
ENST00000561603 (RPAP1-004) 41517176-41544257 protein_coding
ENST00000561631 (RPAP1-013) 41523948-41525207 retained_intron
ENST00000562303 (RPAP1-005) 41517179-41544245 nonsense_mediated_decay
ENST00000563293 (RPAP1-011) 41534805-41536375 retained_intron
ENST00000564934 (RPAP1-014) 41522506-41523844 retained_intron
ENST00000565035 (RPAP1-012) 41523779-41526970 protein_coding
ENST00000565167 (RPAP1-006) 41517176-41521791 retained_intron
ENST00000566863 (RPAP1-008) 41536163-41544269 protein_coding
ENST00000567866 (RPAP1-010) 41535512-41544250 protein_coding
ENST00000568413 (RPAP1-015) 41527988-41533394 processed_transcript
ENST00000569829 (RPAP1-009) 41536653-41544266 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0005IS_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027297-ENSMUSG00000034032 CGP 10090 2:119751320-119787537
GeneTranscriptPositionBiotype
ENSMUSG00000027297 (Ltk)
leukocyte tyrosine kinase 		ENSMUST00000028759 (Ltk-001) 119751326-119760431 protein_coding
ENSMUST00000082130 (Ltk-002) 119751320-119760295 protein_coding
ENSMUST00000127470 (Ltk-004) 119751322-119758521 retained_intron
ENSMUST00000134295 (Ltk-005) 119751330-119758519 retained_intron
ENSMUST00000140224 (Ltk-003) 119751320-119758525 protein_coding
ENSMUST00000182203 (Ltk-201) 119751328-119758525 protein_coding
ENSMUSG00000034032 (Rpap1)
RNA polymerase II associated protein 1 		ENSMUST00000048493 (Rpap1-002) 119763960-119787537 protein_coding
ENSMUST00000099529 (Rpap1-001) 119763959-119787528 protein_coding
ENSMUST00000110793 (Rpap1-006) 119763304-119787504 protein_coding
ENSMUST00000133146 (Rpap1-009) 119777857-119780202 retained_intron
ENSMUST00000136419 (Rpap1-005) 119763963-119787500 nonsense_mediated_decay
ENSMUST00000139311 (Rpap1-003) 119766859-119787519 retained_intron
ENSMUST00000141800 (Rpap1-008) 119778188-119787529 processed_transcript
ENSMUST00000156506 (Rpap1-007) 119777651-119787514 retained_intron
ENSMUST00000184294 (Rpap1-004) 119763966-119787520 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IS_0001ENSDARG00000042861ENSDART00000061547ENSDART00000062907ENSDARG00000075072ENSDART00000110167CIL_0005IS_0002ENSG00000062524ENST00000263800ENST00000355166ENST00000453182ENST00000561619ENST00000563518ENST00000569283ENSG00000103932ENST00000304330ENST00000561603ENST00000561631ENST00000562303ENST00000563293ENST00000564934ENST00000565035ENST00000565167ENST00000566863ENST00000567866ENST00000568413ENST00000569829CIL_0005IS_0003ENSMUSG00000027297ENSMUST00000028759ENSMUST00000082130ENSMUST00000127470ENSMUST00000134295ENSMUST00000140224ENSMUST00000182203ENSMUSG00000034032ENSMUST00000048493ENSMUST00000099529ENSMUST00000110793ENSMUST00000133146ENSMUST00000136419ENSMUST00000139311ENSMUST00000141800ENSMUST00000156506ENSMUST00000184294
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IS_0001ENSDARG00000042861ENSDART00000061547ENSDART00000062907ENSDARG00000075072ENSDART00000110167CIL_0005IS_0002ENSG00000062524ENST00000263800ENST00000355166ENST00000453182ENST00000561619ENST00000563518ENST00000569283ENSG00000103932ENST00000304330ENST00000561603ENST00000561631ENST00000562303ENST00000565167ENST00000569829CIL_0005IS_0003ENSMUSG00000027297ENSMUST00000028759ENSMUST00000082130ENSMUST00000127470ENSMUST00000134295ENSMUST00000140224ENSMUST00000182203ENSMUSG00000034032ENSMUST00000048493ENSMUST00000099529ENSMUST00000136419ENSMUST00000139311ENSMUST00000184294
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042861 ENSDART00000061547 N/A N/A N/A 0.014±0.00 N/A N/A 0.113±0.00 N/A 0.044±0.00 N/A N/A N/A N/A N/A
ENSDART00000062907 N/A N/A N/A 0.025±0.01 N/A N/A 0.114±0.00 N/A 0.043±0.00 N/A 0.093±0.00 N/A N/A N/A
ENSDARG00000075072 ENSDART00000110167 N/A N/A N/A 0.896±0.67 N/A N/A 2.322±0.55 3.348±0.00 1.104±0.00 N/A 1.390±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000062524 ENST00000263800 N/A 0.047±0.00 0.026±0.00 N/A N/A 0.219±0.16 0.088±0.00 0.935±0.00 1.352±0.00 8.999±0.00 N/A 1.564±1.30 3.601±1.65 0.314±0.00
ENST00000355166 N/A N/A N/A N/A 0.130±0.00 N/A N/A N/A N/A N/A N/A N/A 1.943±0.00 1.161±0.00
ENST00000453182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A
ENST00000561619 0.018±0.00 N/A N/A N/A 0.046±0.02 0.092±0.00 N/A N/A 0.297±0.00 N/A N/A N/A N/A 0.854±0.00
ENST00000563518 N/A N/A N/A N/A N/A N/A N/A N/A 0.248±0.00 2.296±0.00 N/A N/A N/A N/A
ENST00000569283 0.021±0.00 0.410±0.00 N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A 0.682±0.00 N/A N/A N/A
ENSG00000103932 ENST00000304330 4.363±0.00 2.535±0.00 N/A 1.664±1.06 2.759±0.00 1.121±0.00 4.032±0.00 1.719±0.00 0.425±0.00 1.546±0.21 5.090±3.88 5.176±1.51 3.738±1.49 4.260±0.80
ENST00000561603 N/A 1.050±0.00 0.756±0.00 N/A 0.846±0.00 1.512±0.45 0.697±0.00 1.288±0.00 1.131±0.27 N/A N/A 3.606±1.24 2.075±0.00 N/A
ENST00000561631 N/A N/A N/A 4.729±0.00 N/A N/A N/A 7.038±0.00 N/A N/A 8.454±0.00 N/A N/A N/A
ENST00000562303 N/A N/A N/A N/A 0.554±0.26 N/A N/A 0.519±0.00 N/A N/A N/A N/A N/A N/A
ENST00000563293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565167 N/A 4.069±0.00 N/A 1.845±0.00 N/A 3.761±0.00 2.248±0.00 2.099±0.00 3.821±0.00 1.580±0.00 5.628±0.00 4.713±1.90 2.635±0.14 4.652±0.00
ENST00000566863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569829 N/A N/A N/A N/A N/A 2.290±0.00 N/A N/A 1.493±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027297 ENSMUST00000028759 N/A 0.351±0.04 N/A N/A N/A 0.446±0.09 0.052±0.00 N/A 0.047±0.00 0.194±0.00 N/A 0.099±0.02 N/A N/A
ENSMUST00000082130 N/A N/A N/A N/A N/A 0.585±0.00 N/A 0.104±0.01 N/A N/A N/A N/A 0.313±0.00 N/A
ENSMUST00000127470 0.052±0.00 0.534±0.00 N/A 0.998±0.65 0.563±0.21 0.382±0.12 0.033±0.01 0.251±0.08 0.053±0.02 0.439±0.00 N/A 0.192±0.07 0.324±0.27 N/A
ENSMUST00000134295 0.126±0.13 N/A 0.073±0.01 0.912±0.62 1.688±0.29 0.441±0.10 0.055±0.00 0.360±0.13 0.093±0.08 0.638±0.16 N/A 0.289±0.15 0.365±0.22 N/A
ENSMUST00000140224 N/A 0.195±0.03 N/A 1.593±1.16 N/A N/A N/A N/A 0.055±0.04 N/A N/A 0.057±0.00 N/A N/A
ENSMUST00000182203 0.473±0.03 0.445±0.13 0.033±0.02 N/A 0.815±0.24 0.403±0.14 0.073±0.00 0.403±0.16 0.096±0.07 0.738±0.36 0.077±0.00 0.446±0.25 0.775±0.55 0.541±0.21
ENSMUSG00000034032 ENSMUST00000048493 2.770±0.62 N/A 3.816±0.36 6.196±1.52 2.668±0.07 N/A 2.395±0.44 1.576±0.66 2.692±1.61 2.191±0.00 3.825±0.73 6.156±2.21 4.077±1.64 2.735±0.45
ENSMUST00000099529 1.020±0.00 N/A 0.810±0.00 N/A 0.912±0.00 N/A N/A 2.317±0.00 0.661±0.28 N/A 0.988±0.24 1.987±0.00 2.215±0.00 1.203±0.23
ENSMUST00000110793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136419 1.207±0.03 5.797±3.11 0.840±0.00 3.225±0.00 2.915±1.56 4.366±1.12 2.793±0.10 3.001±0.82 2.378±1.00 3.034±0.71 N/A 8.715±4.12 4.679±2.63 1.307±0.91
ENSMUST00000139311 1.161±0.01 3.696±0.00 0.835±0.02 1.280±0.00 1.605±0.86 1.806±0.12 0.457±0.00 N/A 0.865±0.20 1.474±0.36 0.755±0.24 4.017±0.00 N/A N/A
ENSMUST00000141800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.266±0.00 N/A

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