C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562303 RPAP1-005 ENSG00000103932 9606 - 15:41517179-41544245 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyENST00000562303
Transcript ID Breast Kidney
ENST00000562303 0.554±0.26 0.519±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0002 CGP 15:41503638-41544269
CIL_0005F5 CIL_0005F5_0001 CGP 15:41517176-41583586

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005488 IEA binding
GO:0005634 IEA nucleus
GO:0032774 IEA RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139311 Rpap1-003 retained_intron Mus_musculus 0 2750
ENSMUST00000136419 Rpap1-005 nonsense_mediated_decay Mus_musculus 0 2745
ENSMUST00000048493 Rpap1-002 protein_coding Mus_musculus 0 2745
ENSMUST00000099529 Rpap1-001 protein_coding Mus_musculus 0 2745
ENSMUST00000110793 Rpap1-006 protein_coding Mus_musculus 0 2745
ENSMUST00000184294 Rpap1-004 nonsense_mediated_decay Mus_musculus 0 1576
ENSMUST00000156506 Rpap1-007 retained_intron Mus_musculus 0 662
ENSMUST00000141800 Rpap1-008 processed_transcript Mus_musculus 0 435
ENSMUST00000115636 Suv39h1-004 protein_coding Mus_musculus 0.000000004 69
ENSMUST00000167619 Diap2-201 protein_coding Mus_musculus 0.000000004 69
ENSMUST00000113320 Diap2-006 protein_coding Mus_musculus 0.000000004 69
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000001 68

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