C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA polymerase II associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034032 Rpap1 10090 - 2:119763304-119787537 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048493 Rpap1-002 119763960-119787537 protein_coding
  ENSMUST00000099529 Rpap1-001 119763959-119787528 protein_coding
  ENSMUST00000110793 Rpap1-006 119763304-119787504 protein_coding
  ENSMUST00000133146 Rpap1-009 119777857-119780202 retained_intron
  ENSMUST00000136419 Rpap1-005 119763963-119787500 nonsense_mediated_decay
  ENSMUST00000139311 Rpap1-003 119766859-119787519 retained_intron
  ENSMUST00000141800 Rpap1-008 119778188-119787529 processed_transcript
  ENSMUST00000156506 Rpap1-007 119777651-119787514 retained_intron
  ENSMUST00000184294 Rpap1-004 119763966-119787520 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048493ENSMUST00000099529ENSMUST00000136419ENSMUST00000139311ENSMUST00000184294
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048493 2.770±0.62 N/A 3.816±0.36 6.196±1.52 2.668±0.07 N/A 2.395±0.44 1.576±0.66 2.692±1.61 2.191±0.00 3.825±0.73 6.156±2.21 4.077±1.64 2.735±0.45
ENSMUST00000099529 1.020±0.00 N/A 0.810±0.00 N/A 0.912±0.00 N/A N/A 2.317±0.00 0.661±0.28 N/A 0.988±0.24 1.987±0.00 2.215±0.00 1.203±0.23
ENSMUST00000136419 1.207±0.03 5.797±3.11 0.840±0.00 3.225±0.00 2.915±1.56 4.366±1.12 2.793±0.10 3.001±0.82 2.378±1.00 3.034±0.71 N/A 8.715±4.12 4.679±2.63 1.307±0.91
ENSMUST00000139311 1.161±0.01 3.696±0.00 0.835±0.02 1.280±0.00 1.605±0.86 1.806±0.12 0.457±0.00 N/A 0.865±0.20 1.474±0.36 0.755±0.24 4.017±0.00 N/A N/A
ENSMUST00000184294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.266±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0003 CGP 2:119751320-119787537
CIL_0005F5 CIL_0005F5_0002 CGP 2:119763304-119818104

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IEA nucleus
GO:0032774 IEA RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075072 rpap1 RNA polymerase II associated protein 1 protein_coding Danio_rerio
ENSG00000103932 RPAP1 RNA polymerase II associated protein 1 protein_coding Homo_sapiens

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