C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA polymerase II associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561603 RPAP1-004 ENSG00000103932 9606 - 15:41517176-41544257 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverOvaryPlacentaENST00000561603
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Ovary Placenta
ENST00000561603 1.050±0.00 0.756±0.00 0.846±0.00 1.512±0.45 0.697±0.00 1.288±0.00 1.131±0.27 3.606±1.24 2.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IS CIL_0005IS_0002 CGP 15:41503638-41544269
CIL_0005F5 CIL_0005F5_0001 CGP 15:41517176-41583586

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139311 Rpap1-003 retained_intron Mus_musculus 0 2045
ENSMUST00000136419 Rpap1-005 nonsense_mediated_decay Mus_musculus 0 2045
ENSMUST00000048493 Rpap1-002 protein_coding Mus_musculus 0 2045
ENSMUST00000099529 Rpap1-001 protein_coding Mus_musculus 0 2045
ENSMUST00000110793 Rpap1-006 protein_coding Mus_musculus 0 2045
ENSMUST00000184294 Rpap1-004 nonsense_mediated_decay Mus_musculus 0 1576
ENSMUST00000156506 Rpap1-007 retained_intron Mus_musculus 0 662
ENSMUST00000141800 Rpap1-008 processed_transcript Mus_musculus 0 435

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