C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105372 RPS19 9606 + 19:41859918-41872926 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221975 RPS19-005 41860257-41871416 protein_coding
  ENST00000593863 RPS19-006 41860446-41871416 protein_coding
  ENST00000598261 RPS19-007 41860769-41869146 protein_coding
  ENST00000598399 RPS19-008 41860778-41869192 nonsense_mediated_decay
  ENST00000598466 RPS19-004 41860255-41861606 retained_intron
  ENST00000598742 RPS19-001 41859918-41872926 protein_coding
  ENST00000600467 RPS19-002 41860255-41869087 protein_coding
  ENST00000601492 RPS19-003 41860255-41869084 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221975ENST00000593863ENST00000598261ENST00000598742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221975 347.291±0.00 920.626±0.00 139.243±0.00 118.194±41.47 430.529±0.00 772.234±297.81 36.965±0.00 226.402±12.01 244.570±0.00 223.895±0.00 173.525±0.00 1317.099±816.90 1537.463±373.99 479.599±41.58
ENST00000593863 140.584±0.00 430.069±0.00 N/A 76.177±0.00 494.370±0.00 N/A 198.989±0.00 203.843±0.00 421.051±0.00 1510.200±0.00 296.341±256.49 245.832±0.00 N/A N/A
ENST00000598261 134.718±0.00 N/A N/A 111.501±0.00 N/A 532.133±0.00 N/A N/A N/A N/A N/A 1179.280±0.00 N/A 325.698±0.00
ENST00000598742 N/A N/A N/A N/A N/A N/A N/A 9.134±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0001 CGP 19:41844743-41872926
CIL_0003W3 CIL_0003W3_0001 CGP 19:41859918-41881372

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IMP ribosomal small subunit assembly
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000462 IMP maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002548 IDA monocyte chemotaxis
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007000 IMP nucleolus organization
GO:0009991 TAS response to extracellular stimulus
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017134 IPI fibroblast growth factor binding
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019901 IPI protein kinase binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030218 IMP erythrocyte differentiation
GO:0030490 IMP maturation of SSU-rRNA
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0042803 IDA protein homodimerization activity
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0051262 IDA protein tetramerization
GO:0051272 TAS positive regulation of cellular component movement
GO:0060265 IDA positive regulation of respiratory burst involved in inflammatory response
GO:0060266 IDA negative regulation of respiratory burst involved in inflammatory response
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030602 rps19 ribosomal protein S19 protein_coding Danio_rerio
ENSMUSG00000040952 Rps19 ribosomal protein S19 protein_coding Mus_musculus

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