C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040952 Rps19 10090 + 7:24884371-24889806 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000108428 Rps19-003 24884636-24889802 protein_coding
  ENSMUST00000108429 Rps19-006 24884714-24889806 protein_coding
  ENSMUST00000108430 Rps19-001 24884371-24889806 protein_coding
  ENSMUST00000124035 Rps19-008 24884917-24888972 protein_coding
  ENSMUST00000129847 Rps19-004 24884633-24889806 nonsense_mediated_decay
  ENSMUST00000130335 Rps19-010 24888190-24889804 processed_transcript
  ENSMUST00000138662 Rps19-002 24884635-24887759 retained_intron
  ENSMUST00000146004 Rps19-009 24888740-24889804 processed_transcript
  ENSMUST00000153451 Rps19-005 24884651-24888950 protein_coding
  ENSMUST00000156372 Rps19-007 24884813-24888930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108429ENSMUST00000108430ENSMUST00000129847ENSMUST00000130335ENSMUST00000138662ENSMUST00000153451ENSMUST00000156372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108429 44.062±6.51 25.183±8.88 N/A 44.899±0.00 N/A N/A N/A N/A N/A N/A 69.331±17.72 233.421±13.81 171.379±84.05 21.463±0.00
ENSMUST00000108430 93.038±34.39 N/A 536.716±31.20 198.461±29.00 82.955±28.72 104.666±20.45 52.414±9.74 114.120±12.70 257.910±255.66 86.511±24.14 55.750±11.72 138.069±40.68 474.952±23.34 38.051±25.17
ENSMUST00000129847 N/A N/A N/A 31.998±0.00 22.395±0.00 N/A N/A N/A 18.018±2.71 N/A N/A 103.805±18.32 106.366±13.85 8.807±0.00
ENSMUST00000130335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 152.378±0.00 143.296±0.00 N/A
ENSMUST00000138662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.323±0.00
ENSMUST00000153451 43.024±2.15 86.806±17.84 N/A N/A 50.452±5.60 N/A N/A N/A N/A N/A N/A 38.102±0.00 N/A N/A
ENSMUST00000156372 143.762±27.14 36.549±7.08 N/A 102.876±28.76 106.881±19.79 136.270±16.16 35.577±9.44 92.097±11.05 93.210±55.05 94.588±3.78 56.245±8.25 286.066±239.73 643.023±167.37 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0002 CGP 7:24870057-24889806
CIL_0003W3 CIL_0003W3_0002 CGP 7:24884371-24902197

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000028 IEA ribosomal small subunit assembly
GO:0000462 IEA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002548 IEA monocyte chemotaxis
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005840 IEA ribosome
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IEA translation
GO:0007000 IEA nucleolus organization
GO:0016020 IEA membrane
GO:0017134 IEA fibroblast growth factor binding
GO:0019901 IEA protein kinase binding
GO:0022627 ISS cytosolic small ribosomal subunit
GO:0030218 ISS erythrocyte differentiation
GO:0030490 IEA maturation of SSU-rRNA
GO:0042274 IEA ribosomal small subunit biogenesis
GO:0042803 IEA protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0051262 IEA protein tetramerization
GO:0060265 IEA positive regulation of respiratory burst involved in inflammatory response
GO:0060266 IEA negative regulation of respiratory burst involved in inflammatory response
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030602 rps19 ribosomal protein S19 protein_coding Danio_rerio
ENSG00000105372 RPS19 ribosomal protein S19 protein_coding Homo_sapiens

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